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  5. Sam_g08722

Sam_g08722


Description : not classified & original description: none


Gene families : OG0000503 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000503_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08722

Target Alias Description ECC score Gene Family Method Actions
AT1G75840 ATROP4, ROP4,... RAC-like GTP binding protein 5 0.04 OrthoFinder output from all 47 species
AT3G51300 ATRAC11, ARAC11,... RHO-related protein from plants 1 0.02 OrthoFinder output from all 47 species
AT4G35020 ARAC3, RAC3,... RAC-like 3 0.02 OrthoFinder output from all 47 species
Adi_g081138 ATRAC11, ARAC11,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22369 ARAC3, RAC3,... small GTPase *(ROP) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27359 ATRAC11, ARAC11,... small GTPase *(ROP) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007804001 ATRAC10, ARAC10,... Multi-process regulation.Rop GTPase regulatory... 0.03 OrthoFinder output from all 47 species
GSVIVT01020653001 ATROP4, ROP4,... Multi-process regulation.Rop GTPase regulatory... 0.04 OrthoFinder output from all 47 species
LOC_Os05g43820.1 ARAC7, ROP9,... small GTPase (ROP) 0.03 OrthoFinder output from all 47 species
LOC_Os06g12790.1 ATRAC8, ATROP10,... small GTPase (ROP) 0.02 OrthoFinder output from all 47 species
Len_g13885 ARAC3, RAC3,... small GTPase *(ROP) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g29379 ATRAC11, ARAC11,... small GTPase *(ROP) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g09513 ARAC3, RAC3,... small GTPase *(ROP) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27441 ATRAC11, ARAC11,... small GTPase *(ROP) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g04924 ATRAC11, ARAC11,... small GTPase *(ROP) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14285 ATRAC11, ARAC11,... small GTPase *(ROP) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000577 ATRAC11, ARAC11,... small GTPase *(ROP) & original description: CDS=437-1027 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004935 ATROP4, ROP4,... small GTPase *(ROP) & original description: CDS=382-930 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0167.g024188 ATRAC11, ARAC11,... small GTPase *(ROP) & original description: CDS=374-982 0.03 OrthoFinder output from all 47 species
Sam_g08669 No alias small GTPase *(ROP) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g32766 ATRAC11, ARAC11,... small GTPase *(ROP) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g03089 ATRAC11, ARAC11,... small GTPase *(ROP) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05440 ATRAC11, ARAC11,... small GTPase *(ROP) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016302_P001 ATRAC1, ROP3,... small GTPase (ROP) 0.02 OrthoFinder output from all 47 species
Zm00001e023913_P001 ATRAC8, ATROP10,... small GTPase (ROP) 0.01 OrthoFinder output from all 47 species
Zm00001e032127_P001 ARAC7, ROP9,... small GTPase (ROP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 36 181
No external refs found!