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  5. Sam_g08583

Sam_g08583


Description : component *(eL6) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001317 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001317_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08583
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00218700 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 OrthoFinder output from all 47 species
AT1G18540 No alias Ribosomal protein L6 family protein 0.27 OrthoFinder output from all 47 species
AT1G74050 No alias Ribosomal protein L6 family protein 0.2 OrthoFinder output from all 47 species
AT1G74060 No alias Ribosomal protein L6 family protein 0.11 OrthoFinder output from all 47 species
Adi_g022078 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g112035 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aev_g02805 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ala_g05526 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Als_g27038 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aob_g18157 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g06856 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Aop_g53417 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene09131.t1 Aspi01Gene09131 component *(eL6) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aspi01Gene59148.t1 Aspi01Gene59148 component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0313.g064223 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g25951 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cba_g30780 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g55334 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.29G021300.1 Ceric.29G021300 component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.29G025100.1 Ceric.29G025100 component *(eL6) of large ribosomal-subunit (LSU)... 0.2 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021127.127 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 OrthoFinder output from all 47 species
Cre01.g011000 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.26 OrthoFinder output from all 47 species
Dac_g11635 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Dcu_g11900 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Dcu_g34737 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Dde_g28378 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g04245 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ehy_g05475 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01032041001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
GSVIVT01033532001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 OrthoFinder output from all 47 species
Gb_01604 No alias component RPL6 of LSU proteome component 0.13 OrthoFinder output from all 47 species
LOC_Os02g37862.1 LOC_Os02g37862 component RPL6 of LSU proteome component 0.27 OrthoFinder output from all 47 species
LOC_Os04g39700.1 LOC_Os04g39700 component RPL6 of LSU proteome component 0.24 OrthoFinder output from all 47 species
Len_g33706 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g12580 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
MA_108607g0010 No alias component RPL6 of LSU proteome component 0.2 OrthoFinder output from all 47 species
Mp3g11670.1 No alias component RPL6 of LSU proteome component 0.23 OrthoFinder output from all 47 species
Msp_g07934 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Msp_g36122 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ore_g06470 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g51766 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g62336 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Pp3c14_4160V3.1 Pp3c14_4160 Ribosomal protein L6 family protein 0.14 OrthoFinder output from all 47 species
Pp3c1_24300V3.1 Pp3c1_24300 Ribosomal protein L6 family protein 0.09 OrthoFinder output from all 47 species
Pp3c2_13300V3.1 Pp3c2_13300 Ribosomal protein L6 family protein 0.03 OrthoFinder output from all 47 species
Ppi_g11150 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g12976 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g28246 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011154 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016460 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Sam_g06914 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Sam_g19281 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g26138 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Sam_g28243 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g45675 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Smo270686 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Solyc04g014720.4.1 Solyc04g014720 component RPL6 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Solyc05g054070.4.1 Solyc05g054070 component RPL6 of LSU proteome component 0.14 OrthoFinder output from all 47 species
Solyc11g012110.2.1 Solyc11g012110 component RPL6 of LSU proteome component 0.19 OrthoFinder output from all 47 species
Spa_g16223 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Spa_g44572 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Tin_g01561 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Zm00001e014979_P001 Zm00001e014979 component RPL6 of LSU proteome component 0.16 OrthoFinder output from all 47 species
Zm00001e022840_P001 Zm00001e022840 component RPL6 of LSU proteome component 0.19 OrthoFinder output from all 47 species
Zm00001e022841_P001 Zm00001e022841 component RPL6 of LSU proteome component 0.22 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
InterPro domains Description Start Stop
IPR005568 Ribosomal_L6_N 5 49
IPR000915 60S_ribosomal_L6E 124 230
No external refs found!