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  5. Sam_g08423

Sam_g08423


Description : catalytic component *(POLA1) of DNA polymerase alpha complex & original description: none


Gene families : OG0005633 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005633_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08423
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00221560 ICU2,... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.05 OrthoFinder output from all 47 species
AT5G67100 ICU2 DNA-directed DNA polymerases 0.06 OrthoFinder output from all 47 species
Als_g33916 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.11 OrthoFinder output from all 47 species
Aop_g08265 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.03 OrthoFinder output from all 47 species
Aspi01Gene70874.t1 ICU2, Aspi01Gene70874 catalytic component *(POLA1) of DNA polymerase alpha... 0.03 OrthoFinder output from all 47 species
Azfi_s0226.g059002 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.05 OrthoFinder output from all 47 species
Ceric.09G047200.1 ICU2, Ceric.09G047200 catalytic component *(POLA1) of DNA polymerase alpha... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000237.42 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.05 OrthoFinder output from all 47 species
Cre04.g214350 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.07 OrthoFinder output from all 47 species
Dcu_g12848 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.16 OrthoFinder output from all 47 species
GSVIVT01022113001 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.12 OrthoFinder output from all 47 species
Gb_26053 ICU2 catalytic component POLA1 of DNA polymerase alpha complex 0.11 OrthoFinder output from all 47 species
Gb_26055 ICU2 DNA polymerase alpha catalytic subunit OS=Oryza sativa... 0.08 OrthoFinder output from all 47 species
LOC_Os01g64820.1 ICU2, LOC_Os01g64820 catalytic component POLA1 of DNA polymerase alpha complex 0.08 OrthoFinder output from all 47 species
Len_g55945 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.15 OrthoFinder output from all 47 species
MA_10427959g0010 ICU2 DNA polymerase alpha catalytic subunit OS=Arabidopsis... 0.09 OrthoFinder output from all 47 species
MA_242082g0010 ICU2 catalytic component POLA1 of DNA polymerase alpha complex 0.08 OrthoFinder output from all 47 species
MA_3471g0020 ICU2 DNA polymerase alpha catalytic subunit OS=Oryza sativa... 0.1 OrthoFinder output from all 47 species
Mp7g03960.1 ICU2 catalytic component POLA1 of DNA polymerase alpha complex 0.06 OrthoFinder output from all 47 species
Msp_g14735 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.1 OrthoFinder output from all 47 species
Nbi_g01498 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.08 OrthoFinder output from all 47 species
Smo232193 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.03 OrthoFinder output from all 47 species
Smo422725 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.02 OrthoFinder output from all 47 species
Solyc02g093300.3.1 ICU2, Solyc02g093300 catalytic component POLA1 of DNA polymerase alpha complex 0.07 OrthoFinder output from all 47 species
Spa_g09409 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.06 OrthoFinder output from all 47 species
Tin_g01298 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.11 OrthoFinder output from all 47 species
Zm00001e019156_P001 ICU2, Zm00001e019156 catalytic component POLA1 of DNA polymerase alpha complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR015088 Znf_DNA-dir_DNA_pol_B_alpha 611 823
IPR006134 DNA-dir_DNA_pol_B_multi_dom 113 570
No external refs found!