Sam_g08389


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08389

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00098p00167700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g50390,... 0.03 OrthoFinder output from all 47 species
Adi_g009422 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g018748 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g066672 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g108175 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g48795 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06689 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06874 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07135 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g12064 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28240 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0049.g030899 No alias not classified & original description: CDS=1-2946 0.03 OrthoFinder output from all 47 species
Azfi_s0371.g067098 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2013 0.03 OrthoFinder output from all 47 species
Cba_g29847 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09988 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os08g13990.1 LOC_Os08g13990 Pentatricopeptide repeat-containing protein At2g37320... 0.03 OrthoFinder output from all 47 species
Len_g05370 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28757 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11120 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53556 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Smo41818 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0032266 phosphatidylinositol-3-phosphate binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0061650 ubiquitin-like protein conjugating enzyme activity IEP HCCA
MF GO:0061657 UFM1 conjugating enzyme activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0071568 UFM1 transferase activity IEP HCCA
BP GO:0071569 protein ufmylation IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 84 132
IPR002885 Pentatricopeptide_repeat 187 234
IPR002885 Pentatricopeptide_repeat 161 183
No external refs found!