Sam_g08388


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08388

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00276p00017800 OTP81,... Pentatricopeptide repeat-containing protein At2g29760,... 0.02 OrthoFinder output from all 47 species
Adi_g003169 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034956 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055417 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g059780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g09730 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g22656 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g32981 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06048 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22382 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g32674 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35641 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30199 REME1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g30718 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06025 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g16798 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28633 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03430 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04000 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04175 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09092 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g10337 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16165 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18330 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23475 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23980 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g35556 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g36072 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g36807 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g43404 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g67889 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene60521.t1 Aspi01Gene60521 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene61522.t1 OTP84, Aspi01Gene61522 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0013.g013171 SLO1 not classified & original description: CDS=1-1446 0.04 OrthoFinder output from all 47 species
Azfi_s0032.g024917 No alias not classified & original description: CDS=1-3621 0.02 OrthoFinder output from all 47 species
Azfi_s0544.g076391 No alias not classified & original description: CDS=1-906 0.07 OrthoFinder output from all 47 species
Azfi_s1396.g102567 No alias not classified & original description: CDS=1-1371 0.06 OrthoFinder output from all 47 species
Azfi_s1756.g106494 No alias not classified & original description: CDS=1-1938 0.04 OrthoFinder output from all 47 species
Azfi_s1775.g106729 No alias not classified & original description: CDS=1-2331 0.05 OrthoFinder output from all 47 species
Cba_g00281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07268 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34429 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g35519 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g45877 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g56830 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g58808 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g77187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G004000.1 Ceric.21G004000 not classified & original description: pacid=50604228... 0.05 OrthoFinder output from all 47 species
Dac_g04704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g10936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g21950 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g28151 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g32152 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32204 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g33056 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g33215 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35762 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43165 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g45763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08304 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08605 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g14626 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g17094 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17266 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g36025 VAC1, ECB2, ATECB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g38425 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g45110 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g45756 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g45813 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g51437 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01032950001 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_28038 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
LOC_Os03g56400.1 LOC_Os03g56400 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Len_g03866 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17578 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g17734 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18985 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g19012 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g28084 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g43892 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44856 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54669 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g20496 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10429043g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_39263g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_57048g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 OrthoFinder output from all 47 species
MA_812716g0010 EMB2758 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
Msp_g04475 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g17336 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28474 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28743 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g33976 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g43763 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g35296 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12875 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13379 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03470 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15317 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16066 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19866 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g35865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g45369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53727 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56659 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g57919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57955 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006530 No alias not classified & original description: CDS=1-570 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006762 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015176 No alias not classified & original description: CDS=1-1458 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0232.g026457 No alias not classified & original description: CDS=1-363 0.04 OrthoFinder output from all 47 species
Sam_g16791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g22788 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g45851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g02637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g06116 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g07289 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g11331 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14009 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14323 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14596 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22195 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23607 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23620 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g24976 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25057 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26431 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27467 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g28071 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g28119 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g33028 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g33770 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50886 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55588 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g57230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g16979 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20412 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26879 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g28972 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g29866 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30416 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g32449 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44634 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g46355 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 318 342
IPR002885 Pentatricopeptide_repeat 114 138
IPR002885 Pentatricopeptide_repeat 241 289
IPR002885 Pentatricopeptide_repeat 37 84
IPR002885 Pentatricopeptide_repeat 139 187
IPR002885 Pentatricopeptide_repeat 344 391
No external refs found!