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  5. Sam_g08338

Sam_g08338


Description : not classified & original description: none


Gene families : OG0001331 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001331_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08338
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AT2G40400 No alias Protein of unknown function (DUF399 and DUF3411) 0.03 OrthoFinder output from all 47 species
AT3G56140 No alias Protein of unknown function (DUF399 and DUF3411) 0.02 OrthoFinder output from all 47 species
Aev_g02433 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g27723 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g23936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g34117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0055.g033944 No alias not classified & original description: CDS=18-2474 0.03 OrthoFinder output from all 47 species
Cba_g03217 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.22G078500.1 Ceric.22G078500 not classified & original description: pacid=50614469... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.104 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020941.40 LCD1 Protein RETICULATA-RELATED 4, chloroplastic... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021617.18 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g18040 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g22117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02819 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g06291 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g11697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g22985 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01032197001 No alias Protein RETICULATA-RELATED 4, chloroplastic... 0.03 OrthoFinder output from all 47 species
GSVIVT01032735001 No alias Protein RETICULATA-RELATED 6, chloroplastic... 0.02 OrthoFinder output from all 47 species
LOC_Os01g61120.1 LOC_Os01g61120 Protein RETICULATA-RELATED 6, chloroplastic... 0.02 OrthoFinder output from all 47 species
Len_g11651 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g35960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g12361 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g15648 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g02954 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11767 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g20912 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g20049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g38821 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g08153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57518 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo177305 No alias Protein RETICULATA-RELATED 5, chloroplastic... 0.04 OrthoFinder output from all 47 species
Smo71514 No alias Protein RETICULATA-RELATED 4, chloroplastic... 0.03 OrthoFinder output from all 47 species
Spa_g52656 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g19385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e019415_P003 Zm00001e019415 Protein RETICULATA-RELATED 6, chloroplastic... 0.02 OrthoFinder output from all 47 species
Zm00001e031571_P001 Zm00001e031571 Protein RETICULATA-RELATED 4, chloroplastic... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005778 peroxisomal membrane IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
BP GO:0016559 peroxisome fission IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031903 microbody membrane IEP HCCA
CC GO:0042579 microbody IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR021825 RETICULATA-related 564 748
IPR007314 Cofac_haem-bd_dom 237 457
No external refs found!