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  5. Sam_g08073

Sam_g08073


Description : regulatory protein *(TMS) of vesicle trafficking & original description: none


Gene families : OG0002049 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08073

Target Alias Description ECC score Gene Family Method Actions
AT5G05570 No alias transducin family protein / WD-40 repeat family protein 0.02 OrthoFinder output from all 47 species
Adi_g083853 No alias regulatory protein *(TMS) of vesicle trafficking &... 0.02 OrthoFinder output from all 47 species
Aob_g10691 No alias regulatory protein *(TMS) of vesicle trafficking &... 0.03 OrthoFinder output from all 47 species
Ceric.04G073600.1 Ceric.04G073600 regulatory protein *(TMS) of vesicle trafficking &... 0.04 OrthoFinder output from all 47 species
Cre12.g558250 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01032802001 No alias No description available 0.04 OrthoFinder output from all 47 species
Len_g00760 No alias regulatory protein *(TMS) of vesicle trafficking &... 0.03 OrthoFinder output from all 47 species
MA_40641g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_7753240g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_8863348g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp8g09160.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g29227 No alias regulatory protein *(TMS) of vesicle trafficking &... 0.04 OrthoFinder output from all 47 species
Pir_g39947 No alias regulatory protein *(TMS) of vesicle trafficking &... 0.02 OrthoFinder output from all 47 species
Sam_g38473 No alias regulatory protein *(TMS) of vesicle trafficking &... 0.02 OrthoFinder output from all 47 species
Zm00001e035944_P002 Zm00001e035944 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR042855 V_SNARE_CC 1059 1100
IPR001680 WD40_repeat 246 274
No external refs found!