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  5. Sam_g08068

Sam_g08068


Description : not classified & original description: none


Gene families : OG0005318 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005318_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08068

Target Alias Description ECC score Gene Family Method Actions
AT2G21440 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Adi_g050354 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.02 OrthoFinder output from all 47 species
Dde_g26389 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.02 OrthoFinder output from all 47 species
LOC_Os03g60930.1 LOC_Os03g60930 pre-60S ribosomal subunit assembly factor (NOP4) 0.02 OrthoFinder output from all 47 species
Ppi_g32963 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
Zm00001e011846_P001 Zm00001e011846 pre-60S ribosomal subunit assembly factor (NOP4) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 23 92
No external refs found!