AMTR_s00029p00034670 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.16

Description : Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana


Gene families : OG_01_0002673 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002673_tree ,
OG_02_0001952 (LandPlants) Phylogenetic Tree(s): OG_02_0001952_tree ,
OG_03_0001479 (SeedPlants) Phylogenetic Tree(s): OG_03_0001479_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00034670
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g18940,... 0.05 Archaeplastida
AT5G02860 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
Gb_07042 No alias plastidial mRNA processing factor (PPR10) 0.04 Archaeplastida
Gb_13589 No alias plastidial mRNA processing factor (PPR10) 0.04 Archaeplastida
LOC_Os05g19380.1 No alias plastidial mRNA processing factor (PPR10) 0.03 Archaeplastida
LOC_Os07g40120.1 No alias plastidial mRNA processing factor (PPR10) 0.07 Archaeplastida
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 Archaeplastida
MA_96691g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 Archaeplastida
Mp8g08650.1 No alias plastidial mRNA processing factor (PPR10) 0.02 Archaeplastida
Pp3c22_3230V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Solyc01g107320.3.1 No alias plastidial mRNA processing factor (PPR10) 0.03 Archaeplastida
Solyc07g017760.1.1 No alias plastidial mRNA processing factor (PPR10) 0.05 Archaeplastida
Zm00001e030419_P001 No alias plastidial mRNA processing factor (PPR10) 0.06 Archaeplastida
Zm00001e035434_P001 No alias plastidial mRNA processing factor (PPR10) 0.07 Archaeplastida
AMTR_s00001p00272430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g18940,... 0.03 LandPlants
AT5G02860 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 LandPlants
Gb_07042 No alias plastidial mRNA processing factor (PPR10) 0.04 LandPlants
Gb_13589 No alias plastidial mRNA processing factor (PPR10) 0.02 LandPlants
LOC_Os05g19380.1 No alias plastidial mRNA processing factor (PPR10) 0.03 LandPlants
LOC_Os07g40120.1 No alias plastidial mRNA processing factor (PPR10) 0.07 LandPlants
MA_6146g0010 No alias plastidial mRNA processing factor (PPR10) 0.02 LandPlants
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 LandPlants
MA_96691g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 LandPlants
Mp8g08650.1 No alias plastidial mRNA processing factor (PPR10) 0.02 LandPlants
Pp3c22_3230V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
Solyc01g107320.3.1 No alias plastidial mRNA processing factor (PPR10) 0.03 LandPlants
Solyc07g017760.1.1 No alias plastidial mRNA processing factor (PPR10) 0.05 LandPlants
Zm00001e030419_P001 No alias plastidial mRNA processing factor (PPR10) 0.06 LandPlants
Zm00001e035434_P001 No alias plastidial mRNA processing factor (PPR10) 0.05 LandPlants
AMTR_s00001p00272430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g18940,... 0.03 SeedPlants
AT5G02860 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 SeedPlants
GSVIVT01029248001 No alias Pentatricopeptide repeat-containing protein At2g18940,... 0.02 SeedPlants
Gb_07042 No alias plastidial mRNA processing factor (PPR10) 0.03 SeedPlants
Gb_13589 No alias plastidial mRNA processing factor (PPR10) 0.02 SeedPlants
LOC_Os05g19380.1 No alias plastidial mRNA processing factor (PPR10) 0.02 SeedPlants
LOC_Os07g40120.1 No alias plastidial mRNA processing factor (PPR10) 0.05 SeedPlants
MA_6146g0010 No alias plastidial mRNA processing factor (PPR10) 0.02 SeedPlants
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 SeedPlants
MA_96691g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 SeedPlants
Solyc07g017760.1.1 No alias plastidial mRNA processing factor (PPR10) 0.04 SeedPlants
Zm00001e030419_P001 No alias plastidial mRNA processing factor (PPR10) 0.04 SeedPlants
Zm00001e035434_P001 No alias plastidial mRNA processing factor (PPR10) 0.05 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 196 225
IPR002885 Pentatricopeptide_repeat 227 276
IPR002885 Pentatricopeptide_repeat 301 347
No external refs found!