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  5. Sam_g07997

Sam_g07997


Description : regulatory component *(RPN11) of 26S proteasome & original description: none


Gene families : OG0003199 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003199_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g07997

Target Alias Description ECC score Gene Family Method Actions
AT5G27607 No alias No description available 0.03 OrthoFinder output from all 47 species
Adi_g086661 No alias regulatory component *(RPN11) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Aev_g41509 No alias regulatory component *(RPN11) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Aop_g01609 No alias regulatory component *(RPN11) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene49217.t1 Aspi01Gene49217 regulatory component *(RPN11) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001542.22 No alias Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
Cre01.g011500 No alias Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
Dac_g03686 No alias regulatory component *(RPN11) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Dcu_g00902 No alias regulatory component *(RPN11) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
LOC_Os01g16190.1 LOC_Os01g16190 regulatory component RPN11 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Lfl_g00788 No alias regulatory component *(RPN11) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
MA_10426083g0010 No alias regulatory component RPN11 of 26S proteasome 0.02 OrthoFinder output from all 47 species
MA_10428869g0010 No alias regulatory component RPN11 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Mp5g01180.1 No alias regulatory component RPN11 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Ore_g05993 No alias regulatory component *(RPN11) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Solyc04g079200.3.1 Solyc04g079200 regulatory component RPN11 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Spa_g21858 No alias regulatory component *(RPN11) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Spa_g41483 No alias regulatory component *(RPN11) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Tin_g01686 No alias regulatory component *(RPN11) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Zm00001e017298_P002 Zm00001e017298 regulatory component RPN11 of 26S proteasome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008233 peptidase activity IEA Interproscan
MF GO:0008237 metallopeptidase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR000555 JAMM/MPN+_dom 30 141
IPR024969 Rpn11/EIF3F_C 176 298
No external refs found!