AMTR_s00029p00034550 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.15

Description : Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana


Gene families : OG_01_0015470 (Archaeplastida) Phylogenetic Tree(s): OG_01_0015470_tree ,
OG_02_0001952 (LandPlants) Phylogenetic Tree(s): OG_02_0001952_tree ,
OG_03_0011457 (SeedPlants) Phylogenetic Tree(s): OG_03_0011457_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00034550
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01037880001 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.04 Archaeplastida
AT5G02860 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 LandPlants
Gb_07042 No alias plastidial mRNA processing factor (PPR10) 0.03 LandPlants
Gb_13589 No alias plastidial mRNA processing factor (PPR10) 0.02 LandPlants
LOC_Os05g19380.1 No alias plastidial mRNA processing factor (PPR10) 0.02 LandPlants
LOC_Os07g40120.1 No alias plastidial mRNA processing factor (PPR10) 0.07 LandPlants
MA_6146g0010 No alias plastidial mRNA processing factor (PPR10) 0.02 LandPlants
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 LandPlants
MA_96691g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 LandPlants
Solyc07g017760.1.1 No alias plastidial mRNA processing factor (PPR10) 0.04 LandPlants
Zm00001e030419_P001 No alias plastidial mRNA processing factor (PPR10) 0.02 LandPlants
Zm00001e035434_P001 No alias plastidial mRNA processing factor (PPR10) 0.06 LandPlants
GSVIVT01037880001 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 81 111
IPR002885 Pentatricopeptide_repeat 253 301
IPR002885 Pentatricopeptide_repeat 8 53
IPR002885 Pentatricopeptide_repeat 117 161
IPR002885 Pentatricopeptide_repeat 323 367
IPR002885 Pentatricopeptide_repeat 389 415
No external refs found!