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  5. Sam_g07636

Sam_g07636


Description : thioredoxin *(TRX-M) & original description: none


Gene families : OG0001012 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001012_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g07636

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00016000 ATHM2,... Redox homeostasis.chloroplast redox homeostasis.M-type... 0.05 OrthoFinder output from all 47 species
AT1G03680 ATHM1, THM1, TRX-M1, ATM1 thioredoxin M-type 1 0.06 OrthoFinder output from all 47 species
AT3G15360 ATHM4, TRX-M4, ATM4 thioredoxin M-type 4 0.07 OrthoFinder output from all 47 species
AT4G03520 ATHM2 Thioredoxin superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g086491 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.09 OrthoFinder output from all 47 species
Adi_g107265 ATHM4, TRX-M4, ATM4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g32022 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g09870 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23908 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12040 ATHM2 thioredoxin *(TRX-M) & original description: none 0.07 OrthoFinder output from all 47 species
Als_g21943 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g48830 ATHM2 thioredoxin *(TRX-M) & original description: none 0.08 OrthoFinder output from all 47 species
Als_g58971 ATHM2 thioredoxin *(TRX-M) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04875 ATHM2 thioredoxin *(TRX-M) & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g08794 ATHM2 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g24176 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g39548 ATHM2 thioredoxin *(TRX-M) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g11048 ATHM2 thioredoxin *(TRX-M) & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene35886.t2 ATHM2, Aspi01Gene35886 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0110.g045543 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: CDS=236-865 0.04 OrthoFinder output from all 47 species
Azfi_s0144.g051537 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: CDS=12-806 0.03 OrthoFinder output from all 47 species
Cba_g19197 ATHM2 thioredoxin *(TRX-M) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g23725 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.11 OrthoFinder output from all 47 species
Ceric.09G062900.1 ATHM2, Ceric.09G062900 thioredoxin *(TRX-M) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.16G010700.1 ATHM4, TRX-M4,... thioredoxin *(TRX-M) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.23G041700.1 ATHM2, Ceric.23G041700 thioredoxin *(TRX-M) & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.30G036000.1 ATHM1, THM1,... thioredoxin *(TRX-M) & original description:... 0.09 OrthoFinder output from all 47 species
Dac_g01349 ATHM2 thioredoxin *(TRX-M) & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g14399 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g21277 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g02608 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g03185 ATHM2 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g08153 ATHM2 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01010012001 ATHM4, TRX-M4, ATM4 Redox homeostasis.chloroplast redox homeostasis.M-type... 0.09 OrthoFinder output from all 47 species
Gb_00914 ATHM2 M-type thioredoxin 0.04 OrthoFinder output from all 47 species
Gb_31181 ATHM2 M-type thioredoxin 0.04 OrthoFinder output from all 47 species
LOC_Os12g08730.1 ATHM2, LOC_Os12g08730 M-type thioredoxin 0.07 OrthoFinder output from all 47 species
Len_g07374 ATHM2 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g09823 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.07 OrthoFinder output from all 47 species
Len_g16078 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g19591 ATHM2 thioredoxin *(TRX-M) & original description: none 0.02 OrthoFinder output from all 47 species
MA_474303g0010 ATHM2 M-type thioredoxin 0.03 OrthoFinder output from all 47 species
Mp4g18950.1 ATHM1, THM1, TRX-M1, ATM1 M-type thioredoxin 0.09 OrthoFinder output from all 47 species
Msp_g12620 ATHM2 thioredoxin *(TRX-M) & original description: none 0.09 OrthoFinder output from all 47 species
Ore_g10092 ATHM2 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g01815 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g10112 ATHM2 thioredoxin *(TRX-M) & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g10809 ATHM2 thioredoxin *(TRX-M) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c25_2880V3.1 ATHM1, THM1,... thioredoxin M-type 1 0.03 OrthoFinder output from all 47 species
Ppi_g02691 ATHM2 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g22064 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010739 ATHM2 thioredoxin *(TRX-M) & original description: CDS=187-714 0.02 OrthoFinder output from all 47 species
Sam_g06580 No alias thioredoxin *(TRX-M) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g063190.3.1 ATHM4, TRX-M4,... M-type thioredoxin 0.04 OrthoFinder output from all 47 species
Solyc10g006970.3.1 ATHM4, TRX-M4,... M-type thioredoxin 0.07 OrthoFinder output from all 47 species
Solyc12g013810.2.1 ATHM4, TRX-M4,... M-type thioredoxin 0.08 OrthoFinder output from all 47 species
Spa_g06831 ATHM2 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g06832 ATHM2 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g06833 ATHM2 thioredoxin *(TRX-M) & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g19071 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g52025 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g00552 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.08 OrthoFinder output from all 47 species
Zm00001e018385_P001 ATHM4, TRX-M4,... M-type thioredoxin 0.05 OrthoFinder output from all 47 species
Zm00001e039586_P001 ATHM2, Zm00001e039586 M-type thioredoxin 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR013766 Thioredoxin_domain 145 244
No external refs found!