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  5. Sam_g07445

Sam_g07445


Description : beta-type-1 component *(PBA) of 26S proteasome & original description: none


Gene families : OG0003808 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003808_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g07445

Target Alias Description ECC score Gene Family Method Actions
AT4G31300 PBA1 N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.03 OrthoFinder output from all 47 species
Adi_g063247 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Als_g55786 PBA1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g00458 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001098.5 PBA1 Protein degradation.26S proteasome.20S core... 0.02 OrthoFinder output from all 47 species
Cre06.g279000 PBA1 Protein degradation.26S proteasome.20S core... 0.04 OrthoFinder output from all 47 species
Cre12.g531100 PBA1 Protein degradation.26S proteasome.20S core... 0.03 OrthoFinder output from all 47 species
Dac_g01306 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Ehy_g04398 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
LOC_Os02g53060.1 PBA1, LOC_Os02g53060 component beta type-1 of 26S proteasome 0.03 OrthoFinder output from all 47 species
LOC_Os06g04800.1 PBA1, LOC_Os06g04800 component beta type-1 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Msp_g08337 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Pnu_g02359 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 15 195
No external refs found!