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  5. Sam_g06900

Sam_g06900


Description : methylation reader Alfin of PRC1 complex & original description: none


Gene families : OG0000258 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g06900

Target Alias Description ECC score Gene Family Method Actions
AT5G26210 AL4 alfin-like 4 0.02 OrthoFinder output from all 47 species
Adi_g008296 AL1 methylation reader Alfin of PRC1 complex & original... 0.03 OrthoFinder output from all 47 species
Aop_g33012 AL1 methylation reader Alfin of PRC1 complex & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007919 AL4 methylation reader Alfin of PRC1 complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.09G096700.1 AL7, Ceric.09G096700 methylation reader Alfin of PRC1 complex & original... 0.02 OrthoFinder output from all 47 species
Dcu_g35547 AL2 methylation reader Alfin of PRC1 complex & original... 0.02 OrthoFinder output from all 47 species
Mp1g23460.1 AL1 Alfin-like transcription factor 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006834 AL4 methylation reader Alfin of PRC1 complex & original... 0.02 OrthoFinder output from all 47 species
Solyc12g096040.3.1 AL4, Solyc12g096040 Alfin-like transcription factor 0.05 OrthoFinder output from all 47 species
Tin_g15615 AL1 methylation reader Alfin of PRC1 complex & original... 0.02 OrthoFinder output from all 47 species
Zm00001e021294_P001 AL7, Zm00001e021294 Alfin-like transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e027040_P001 AL6, Zm00001e027040 Alfin-like transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
MF GO:0042393 histone binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0030915 Smc5-Smc6 complex IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0106068 SUMO ligase complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 314 362
IPR021998 Alfin_N 125 249
No external refs found!