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  5. Sam_g06711

Sam_g06711


Description : group-II intron splicing RNA helicase *(RH3) & original description: none


Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g06711

Target Alias Description ECC score Gene Family Method Actions
AT3G22310 PMH1, ATRH9 putative mitochondrial RNA helicase 1 0.02 OrthoFinder output from all 47 species
AT5G26742 emb1138 DEAD box RNA helicase (RH3) 0.03 OrthoFinder output from all 47 species
Adi_g055951 emb1138 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g056600 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107957 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g10440 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Als_g03195 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Aob_g09620 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08480 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Aop_g10862 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0052.g031680 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s2641.g112487 emb1138 not classified & original description: CDS=202-2694 0.04 OrthoFinder output from all 47 species
Cba_g01233 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g02044 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Cba_g18561 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g36237 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Ceric.06G054800.1 emb1138, Ceric.06G054800 not classified & original description: pacid=50619432... 0.07 OrthoFinder output from all 47 species
Ceric.17G055300.1 emb1138, Ceric.17G055300 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Ceric.21G051700.1 emb1138, Ceric.21G051700 group-II intron splicing RNA helicase *(RH3) & original... 0.09 OrthoFinder output from all 47 species
Ceric.38G064300.1 PRH75, Ceric.38G064300 not classified & original description: pacid=50580225... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.151 emb1138 DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays 0.02 OrthoFinder output from all 47 species
Dac_g01008 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Dac_g02286 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g04260 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g21286 emb1138 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g00876 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Dde_g09784 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g15362 emb1138 group-II intron splicing RNA helicase *(PMH) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01000821001 PMH2, ATRH53 RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
Gb_10087 PMH2, ATRH53 DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Gb_35745 emb1138 RH3 plastidial RNA basal splicing factor 0.02 OrthoFinder output from all 47 species
LOC_Os07g05050.1 PMH2, ATRH53,... RNA helicase (PMH) 0.02 OrthoFinder output from all 47 species
LOC_Os12g41715.1 PMH2, ATRH53,... RNA helicase (PMH) 0.03 OrthoFinder output from all 47 species
Lfl_g06681 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
MA_10206082g0010 PMH2, ATRH53 RNA helicase (PMH) 0.03 OrthoFinder output from all 47 species
Msp_g10755 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g13082 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.06 OrthoFinder output from all 47 species
Msp_g22012 emb1138 sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.04 OrthoFinder output from all 47 species
Nbi_g02348 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Nbi_g28749 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Ore_g29256 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Ore_g38810 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05277 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Pir_g32379 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c1_40060V3.1 emb1138, Pp3c1_40060 DEAD box RNA helicase (RH3) 0.01 OrthoFinder output from all 47 species
Ppi_g43098 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015897 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019903 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Smo99603 emb1138 DEAD-box ATP-dependent RNA helicase 3, chloroplastic... 0.03 OrthoFinder output from all 47 species
Solyc07g044760.3.1 PMH2, ATRH53,... RNA helicase (PMH) 0.02 OrthoFinder output from all 47 species
Spa_g06515 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.07 OrthoFinder output from all 47 species
Spa_g08414 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Spa_g25942 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08271 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Tin_g39635 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.08 OrthoFinder output from all 47 species
Zm00001e003219_P001 PMH2, ATRH53,... RNA helicase (PMH) 0.02 OrthoFinder output from all 47 species
Zm00001e011716_P001 emb1138, Zm00001e011716 RH3 plastidial RNA basal splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e018107_P001 PMH2, ATRH53,... RNA helicase (PMH) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR012562 GUCT 540 636
IPR001650 Helicase_C 350 452
IPR011545 DEAD/DEAH_box_helicase_dom 135 307
No external refs found!