Sam_g06697


Description : component *(NOT10) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0004355 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004355_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g06697

Target Alias Description ECC score Gene Family Method Actions
Adi_g086850 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.02 OrthoFinder output from all 47 species
Aev_g17241 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.02 OrthoFinder output from all 47 species
Gb_09722 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os09g03600.1 LOC_Os09g03600 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g16359 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.02 OrthoFinder output from all 47 species
MA_160950g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g23240.1 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Solyc07g007890.3.1 Solyc07g007890 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006012 galactose metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!