Sam_g06588


Description : not classified & original description: none


Gene families : OG0001843 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001843_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g06588

Target Alias Description ECC score Gene Family Method Actions
Adi_g010784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g015212 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g015213 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g015214 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g016106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g023304 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g046355 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g054367 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g113088 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g02864 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01963 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20928 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000991 No alias not classified & original description: CDS=384-923 0.05 OrthoFinder output from all 47 species
Azfi_s0006.g010308 No alias not classified & original description: CDS=1-894 0.06 OrthoFinder output from all 47 species
Azfi_s0116.g046360 No alias not classified & original description: CDS=83-760 0.04 OrthoFinder output from all 47 species
Cba_g05124 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19818 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.24G060800.1 Ceric.24G060800 not classified & original description: pacid=50629393... 0.05 OrthoFinder output from all 47 species
Ceric.39G003900.1 Ceric.39G003900 not classified & original description: pacid=50583435... 0.02 OrthoFinder output from all 47 species
Dac_g00520 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g02572 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12231 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g33243 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g18787 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g10039 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g11619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g19308 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19309 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g05144 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g10321 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g01836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g19667 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g38624 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g39754 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04803 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g08933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g00763 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g38998 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001099 No alias not classified & original description: CDS=35-1363 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004360 No alias not classified & original description: CDS=184-687 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013292 No alias not classified & original description: CDS=107-649 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0046.g013395 No alias not classified & original description: CDS=85-822 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026752 No alias not classified & original description: CDS=152-814 0.04 OrthoFinder output from all 47 species
Sam_g17439 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g06801 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g24141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01612 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10596 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!