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  5. Sam_g06538

Sam_g06538


Description : component *(U2A) of U2 snRNP complex & original description: none


Gene families : OG0005171 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005171_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g06538

Target Alias Description ECC score Gene Family Method Actions
Als_g21682 U2A' component *(U2A) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07390 U2A' component *(U2A) of U2 snRNP complex & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.12G006500.1 U2A', Ceric.12G006500 component *(U2A) of U2 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Dcu_g06126 U2A' component *(U2A) of U2 snRNP complex & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01001138001 U2A' RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Nbi_g13396 U2A' component *(U2A) of U2 snRNP complex & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g07663 U2A' component *(U2A) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e006375_P001 U2A', Zm00001e006375 protein factor U2A of U2 small nuclear ribonucleoprotein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!