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  5. Sam_g06521

Sam_g06521


Description : not classified & original description: none


Gene families : OG0002185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g06521

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00238310 YLMG2, ATYLMG2,... YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT5G21920 YLMG2, ATYLMG2 YGGT family protein 0.05 OrthoFinder output from all 47 species
Adi_g046778 YLMG2, ATYLMG2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18000 YLMG2, ATYLMG2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g07670 YLMG2, ATYLMG2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g02771 YLMG2, ATYLMG2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0018.g014976 No alias not classified & original description: CDS=84-614 0.05 OrthoFinder output from all 47 species
Cba_g11805 YLMG2, ATYLMG2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G048700.1 YLMG2, ATYLMG2,... not classified & original description: pacid=50602487... 0.12 OrthoFinder output from all 47 species
Ceric.26G006500.1 YLMG1-2,... plastid-nucleoid partitioning factor *(YLMG1) & original... 0.02 OrthoFinder output from all 47 species
Cre12.g557050 YLMG2, ATYLMG2 YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Cre16.g684300 YLMG2, ATYLMG2 No description available 0.02 OrthoFinder output from all 47 species
Dac_g31838 YLMG2, ATYLMG2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g09359 YLMG2, ATYLMG2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g10748 YLMG2, ATYLMG2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02100 YLMG2, ATYLMG2 not classified & original description: none 0.08 OrthoFinder output from all 47 species
GSVIVT01035473001 YLMG2, ATYLMG2 YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_33767 YLMG2, ATYLMG2 YlmG homolog protein 2, chloroplastic OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os03g08080.1 YLMG2, ATYLMG2,... YlmG homolog protein 2, chloroplastic OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g05180 YLMG2, ATYLMG2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g05213 YLMG2, ATYLMG2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_9458287g0010 YLMG2, ATYLMG2 YlmG homolog protein 2, chloroplastic OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp3g13060.1 YLMG2, ATYLMG2 YlmG homolog protein 2, chloroplastic OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Msp_g10281 YLMG2, ATYLMG2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11258 YLMG2, ATYLMG2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g18598 YLMG2, ATYLMG2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g18599 YLMG2, ATYLMG2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11582 YLMG2, ATYLMG2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g06607 YLMG2, ATYLMG2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31514 YLMG2, ATYLMG2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0067.g016203 YLMG2, ATYLMG2 not classified & original description: CDS=1-753 0.06 OrthoFinder output from all 47 species
Solyc08g061630.3.1 YLMG2, ATYLMG2,... YlmG homolog protein 2, chloroplastic OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Spa_g10431 YLMG2, ATYLMG2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g00523 YLMG2, ATYLMG2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e038876_P002 Zm00001e038876 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
BP GO:0006541 glutamine metabolic process IEP HCCA
BP GO:0006542 glutamine biosynthetic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003425 CCB3/YggT 136 199
No external refs found!