Sam_g06258

Description : component *(uL24) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000884 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000884_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g06258
Cluster	HCCA: Cluster_78

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00214810	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
AMTR_s00065p00088770	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
AT3G49910	No alias	Translation protein SH3-like family protein	0.05	OrthoFinder output from all 47 species
AT5G67510	No alias	Translation protein SH3-like family protein	0.04	OrthoFinder output from all 47 species
Adi_g041472	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g094185	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g37339	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Als_g58453	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g68629	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cba_g70452	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.06G075600.1	Ceric.06G075600	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.25G058400.1	Ceric.25G058400	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.25G058700.1	Ceric.25G058700	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000144.60	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Cre01.g040000	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Dac_g26116	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dac_g26942	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dac_g27086	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g24782	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Gb_06102	No alias	component RPL26 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os11g05370.1	LOC_Os11g05370	component RPL26 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os12g05430.1	LOC_Os12g05430	component RPL26 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Len_g44310	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g05207	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g15405	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
MA_13141g0010	No alias	component RPL26 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Mp2g12870.1	No alias	component RPL26 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Ore_g08095	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pir_g06360	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c14_25170V3.1	Pp3c14_25170	Translation protein SH3-like family protein	0.03	OrthoFinder output from all 47 species
Pp3c1_25000V3.1	Pp3c1_25000	Translation protein SH3-like family protein	0.02	OrthoFinder output from all 47 species
Pp3c2_15910V3.1	Pp3c2_15910	Translation protein SH3-like family protein	0.01	OrthoFinder output from all 47 species
Ppi_g20756	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g33996	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g36832	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g05724	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Smo227399	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Solyc02g064670.1.1	Solyc02g064670	component RPL26 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Solyc03g044000.1.1	Solyc03g044000	component RPL26 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Spa_g54872	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Tin_g16183	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003714	transcription corepressor activity	IEP	HCCA
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	HCCA
MF	GO:0004478	methionine adenosyltransferase activity	IEP	HCCA
MF	GO:0004620	phospholipase activity	IEP	HCCA
MF	GO:0004623	phospholipase A2 activity	IEP	HCCA
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
CC	GO:0005740	mitochondrial envelope	IEP	HCCA
CC	GO:0005751	mitochondrial respiratory chain complex IV	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006556	S-adenosylmethionine biosynthetic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
MF	GO:0008073	ornithine decarboxylase inhibitor activity	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
BP	GO:0009060	aerobic respiration	IEP	HCCA
BP	GO:0015711	organic anion transport	IEP	HCCA
BP	GO:0015718	monocarboxylic acid transport	IEP	HCCA
BP	GO:0015849	organic acid transport	IEP	HCCA
BP	GO:0015908	fatty acid transport	IEP	HCCA
BP	GO:0015909	long-chain fatty acid transport	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
MF	GO:0016298	lipase activity	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
BP	GO:0019646	aerobic electron transport chain	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
BP	GO:0022904	respiratory electron transport chain	IEP	HCCA
CC	GO:0031967	organelle envelope	IEP	HCCA
CC	GO:0031975	envelope	IEP	HCCA
BP	GO:0032309	icosanoid secretion	IEP	HCCA
MF	GO:0042979	ornithine decarboxylase regulator activity	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
CC	GO:0045277	respiratory chain complex IV	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
BP	GO:0046500	S-adenosylmethionine metabolic process	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
BP	GO:0046942	carboxylic acid transport	IEP	HCCA
BP	GO:0050482	arachidonic acid secretion	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
CC	GO:0070069	cytochrome complex	IEP	HCCA
BP	GO:0071715	icosanoid transport	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
CC	GO:0098803	respiratory chain complex	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA
BP	GO:1903963	arachidonate transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005756	Ribosomal_L26/L24P_euk/arc	8	122
IPR005824	KOW	51	82

External Links

No external refs found!

Sam_g06258

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation