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  5. Sam_g06118

Sam_g06118


Description : component *(eL28) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000910 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000910_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g06118

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00210210 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
AT2G19730 No alias Ribosomal L28e protein family 0.11 OrthoFinder output from all 47 species
AT4G29410 No alias Ribosomal L28e protein family 0.12 OrthoFinder output from all 47 species
Aev_g16544 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g00426 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g30166 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aob_g35789 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aob_g42260 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Aop_g00977 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Ceric.25G035500.1 Ceric.25G035500 component *(eL28) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020710.93 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
Cre11.g467578 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
Dcu_g14613 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dde_g08723 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ehy_g03161 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01016895001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Gb_38783 No alias component RPL28 of LSU proteome component 0.05 OrthoFinder output from all 47 species
LOC_Os01g51020.1 LOC_Os01g51020 component RPL28 of LSU proteome component 0.02 OrthoFinder output from all 47 species
LOC_Os02g57540.1 LOC_Os02g57540 component RPL28 of LSU proteome component 0.12 OrthoFinder output from all 47 species
LOC_Os05g46430.1 LOC_Os05g46430 component RPL28 of LSU proteome component 0.09 OrthoFinder output from all 47 species
Len_g16638 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g24992 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_10428490g0010 No alias component RPL28 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Mp1g26940.1 No alias component RPL28 of LSU proteome component 0.09 OrthoFinder output from all 47 species
Msp_g10686 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Msp_g38943 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g03637 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g60467 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Pp3c14_10480V3.1 Pp3c14_10480 Ribosomal L28e protein family 0.04 OrthoFinder output from all 47 species
Pp3c17_14060V3.1 Pp3c17_14060 Ribosomal L28e protein family 0.09 OrthoFinder output from all 47 species
Pp3c2_6100V3.1 Pp3c2_6100 Ribosomal L28e protein family 0.07 OrthoFinder output from all 47 species
Ppi_g19271 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0275.g027057 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g05292 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g31428 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Sam_g37199 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Smo164298 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
Solyc03g121330.3.1 Solyc03g121330 component RPL28 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Solyc06g062500.4.1 Solyc06g062500 component RPL28 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Spa_g19251 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Spa_g21825 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Tin_g35509 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e026410_P001 Zm00001e026410 component RPL28 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Zm00001e032283_P002 Zm00001e032283 component RPL28 of LSU proteome component 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR029004 L28e/Mak16 8 127
No external refs found!