Sam_g05923

Description : component *(eL21) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001239 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001239_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g05923

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00252940	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
AMTR_s00024p00178920	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
AT1G09590	No alias	Translation protein SH3-like family protein	0.09	OrthoFinder output from all 47 species
AT1G09690	No alias	Translation protein SH3-like family protein	0.08	OrthoFinder output from all 47 species
AT1G57660	No alias	Translation protein SH3-like family protein	0.06	OrthoFinder output from all 47 species
Adi_g043900	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g043901	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Adi_g126899	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aev_g05703	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g12117	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Als_g08626	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g38962	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Als_g55086	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g62927	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aob_g03881	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g05077	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Aop_g09546	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Aop_g17674	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g35273	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Aop_g54674	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aspi01Gene20055.t1	Aspi01Gene20055	component *(eL21) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aspi01Gene24168.t1	Aspi01Gene24168	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0005.g009168	No alias	not classified & original description: CDS=164-400	0.02	OrthoFinder output from all 47 species
Azfi_s0204.g057708	No alias	not classified & original description: CDS=1-432	0.02	OrthoFinder output from all 47 species
Azfi_s0509.g074695	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cba_g20939	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cba_g68360	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.07G094100.1	Ceric.07G094100	component *(eL21) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Ceric.10G032200.1	Ceric.10G032200	component *(eL21) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ceric.24G006900.1	Ceric.24G006900	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000640.5	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
Cre06.g278135	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
Dac_g13798	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Dac_g25425	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dcu_g14505	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g30991	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01001130001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
GSVIVT01033444001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01033455001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
Gb_09077	No alias	component RPL21 of LSU proteome component	0.06	OrthoFinder output from all 47 species
LOC_Os03g04750.1	LOC_Os03g04750	component RPL21 of LSU proteome component	0.1	OrthoFinder output from all 47 species
LOC_Os10g32820.1	LOC_Os10g32820	component RPL21 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Len_g11206	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
MA_186351g0010	No alias	component RPL21 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Mp6g01390.1	No alias	component RPL21 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Msp_g34423	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Nbi_g06034	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ore_g18005	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c12_9320V3.1	Pp3c12_9320	Translation protein SH3-like family protein	0.04	OrthoFinder output from all 47 species
Pp3c13_2360V3.1	Pp3c13_2360	Translation protein SH3-like family protein	0.02	OrthoFinder output from all 47 species
Pp3c3_5550V3.1	Pp3c3_5550	Translation protein SH3-like family protein	0.05	OrthoFinder output from all 47 species
Pp3c4_21520V3.1	Pp3c4_21520	Translation protein SH3-like family protein	0.03	OrthoFinder output from all 47 species
Sam_g15602	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g38886	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Sam_g52957	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Smo170832	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Solyc10g078960.2.1	Solyc10g078960	component RPL21 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Solyc10g080590.2.1	Solyc10g080590	component RPL21 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Spa_g21282	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Spa_g21283	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Spa_g29345	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g52174	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Tin_g29829	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Zm00001e000341_P001	Zm00001e000341	component RPL21 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Zm00001e004623_P001	Zm00001e004623	component RPL21 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Zm00001e012727_P001	Zm00001e012727	component RPL21 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Zm00001e038963_P001	Zm00001e038963	component RPL21 of LSU proteome component	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
CC	GO:0005751	mitochondrial respiratory chain complex IV	IEP	HCCA
CC	GO:0005861	troponin complex	IEP	HCCA
BP	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006448	regulation of translational elongation	IEP	HCCA
BP	GO:0006449	regulation of translational termination	IEP	HCCA
BP	GO:0009060	aerobic respiration	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
BP	GO:0019646	aerobic electron transport chain	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
BP	GO:0022904	respiratory electron transport chain	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034250	positive regulation of amide metabolic process	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0043022	ribosome binding	IEP	HCCA
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
CC	GO:0045277	respiratory chain complex IV	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0045901	positive regulation of translational elongation	IEP	HCCA
BP	GO:0045905	positive regulation of translational termination	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
CC	GO:0070069	cytochrome complex	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0098803	respiratory chain complex	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001147	Ribosomal_L21e	1	101

External Links

No external refs found!

Sam_g05923

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation