Sam_g05824

Description : component *(eL34) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000940 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000940_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g05824
Cluster	HCCA: Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00260490	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
AMTR_s00010p00260730	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
AT1G26880	No alias	Ribosomal protein L34e superfamily protein	0.07	OrthoFinder output from all 47 species
AT1G69620	RPL34	ribosomal protein L34	0.08	OrthoFinder output from all 47 species
AT3G28900	No alias	Ribosomal protein L34e superfamily protein	0.08	OrthoFinder output from all 47 species
Adi_g023873	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Adi_g049423	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g101365	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Adi_g107643	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g128643	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ala_g05903	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g19937	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Aob_g25976	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aob_g37150	RPL34	component *(eL34) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g25989	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0045.g029897	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Azfi_s0094.g043410	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0225.g058934	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Ceric.29G078700.1	Ceric.29G078700	component *(eL34) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000632.3	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Cre16.g661050	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
Dac_g02443	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Dcu_g20175	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Dcu_g27998	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g28753	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
GSVIVT01011419001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01019985001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
Gb_36060	No alias	component RPL34 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os08g06040.1	LOC_Os08g06040	component RPL34 of LSU proteome component	0.13	OrthoFinder output from all 47 species
LOC_Os08g33920.1	LOC_Os08g33920	component RPL34 of LSU proteome component	0.07	OrthoFinder output from all 47 species
LOC_Os09g24690.1	LOC_Os09g24690	component RPL34 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Len_g06750	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g27402	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g31825	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
MA_109553g0010	No alias	component RPL34 of LSU proteome component	0.05	OrthoFinder output from all 47 species
MA_175574g0010	No alias	component RPL34 of LSU proteome component	0.05	OrthoFinder output from all 47 species
MA_7581523g0010	No alias	component RPL34 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Mp4g17040.1	No alias	component RPL34 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Msp_g09133	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Msp_g39040	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Nbi_g20020	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ore_g10506	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c11_2940V3.1	RPL34, Pp3c11_2940	Ribosomal protein L34e superfamily protein	0.05	OrthoFinder output from all 47 species
Pp3c11_3090V3.1	RPL34, Pp3c11_3090	Ribosomal protein L34e superfamily protein	0.03	OrthoFinder output from all 47 species
Pp3c1_1800V3.1	RPL34, Pp3c1_1800	Ribosomal protein L34e superfamily protein	0.04	OrthoFinder output from all 47 species
Pp3c25_11980V3.1	Pp3c25_11980	Ribosomal protein L34e superfamily protein	0.04	OrthoFinder output from all 47 species
Pp3c2_34570V3.1	Pp3c2_34570	Ribosomal protein L34e superfamily protein	0.05	OrthoFinder output from all 47 species
Pp3c7_21380V3.1	Pp3c7_21380	Ribosomal protein L34e superfamily protein	0.06	OrthoFinder output from all 47 species
Ppi_g22544	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g25958	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g07710	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g23859	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g39155	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g44116	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g46511	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Smo113433	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
Solyc05g007560.3.1	Solyc05g007560	component RPL34 of LSU proteome component	0.14	OrthoFinder output from all 47 species
Solyc06g069860.4.1	Solyc06g069860	component RPL34 of LSU proteome component	0.15	OrthoFinder output from all 47 species
Spa_g28558	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g37008	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Tin_g26519	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Zm00001e004116_P001	Zm00001e004116	component RPL34 of LSU proteome component	0.1	OrthoFinder output from all 47 species
Zm00001e021733_P002	Zm00001e021733	component RPL34 of LSU proteome component	0.1	OrthoFinder output from all 47 species
Zm00001e022460_P001	Zm00001e022460	component RPL34 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e034114_P001	Zm00001e034114	component RPL34 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Zm00001e040229_P001	Zm00001e040229	component RPL34 of LSU proteome component	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006448	regulation of translational elongation	IEP	HCCA
BP	GO:0006449	regulation of translational termination	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
MF	GO:0030414	peptidase inhibitor activity	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034250	positive regulation of amide metabolic process	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0043022	ribosome binding	IEP	HCCA
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0045901	positive regulation of translational elongation	IEP	HCCA
BP	GO:0045905	positive regulation of translational termination	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
MF	GO:0061134	peptidase regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008195	Ribosomal_L34Ae	2	93

External Links

No external refs found!

Sam_g05824

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation