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  5. Sam_g05400

Sam_g05400


Description : component *(uS17) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0004111 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004111_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g05400
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Adi_g094879 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Adi_g109252 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Adi_g121637 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Adi_g124963 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ala_g38476 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Aob_g36005 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aop_g22668 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aop_g46162 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Dac_g00120 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Nbi_g32977 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g20449 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g27530 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g44230 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g44826 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Ppi_g54629 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Sam_g32555 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!