Sam_g05070


Description : not classified & original description: none


Gene families : OG0000110 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g05070

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00227390 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AMTR_s00058p00216470 RAP2.7, TOE1,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
AMTR_s00065p00077750 DRG, CKC, CKC1,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
AT1G79700 No alias Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G20840 PLT1 Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G36920 AP2, FLO2, FL1 Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G65510 AIL7 AINTEGUMENTA-like 7 0.02 OrthoFinder output from all 47 species
AT5G67180 TOE3 target of early activation tagged (EAT) 3 0.03 OrthoFinder output from all 47 species
Adi_g018198 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.04 OrthoFinder output from all 47 species
Adi_g058145 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.04 OrthoFinder output from all 47 species
Adi_g058146 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067566 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069103 AP2, FLO2, FL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04489 AIL5, EMK, CHO1 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Aev_g39456 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ala_g28572 BBM not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05705 BBM AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Als_g14196 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.04 OrthoFinder output from all 47 species
Als_g14197 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Als_g15824 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Aob_g17577 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Aob_g20859 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Aob_g27594 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene24152.t1 PLT2, Aspi01Gene24152 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0059.g034553 AIL5, EMK, CHO1 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Cba_g06694 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Cba_g13334 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Cba_g59950 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.04 OrthoFinder output from all 47 species
Ceric.03G054600.1 ADAP, Ceric.03G054600 AP2-type transcription factor *(WRI/AIL) & original... 0.04 OrthoFinder output from all 47 species
Ceric.12G002600.1 Ceric.12G002600 AP2-type transcription factor *(WRI/AIL) & original... 0.04 OrthoFinder output from all 47 species
Ceric.15G054600.1 PLT2, Ceric.15G054600 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ceric.1Z150100.1 AP2, FLO2, FL1,... AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Ceric.31G036600.1 Ceric.31G036600 AP2-type transcription factor *(WRI/AIL) & original... 0.04 OrthoFinder output from all 47 species
Ceric.32G008600.1 BBM, Ceric.32G008600 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Cre08.g385350 HRE1 No description available 0.01 OrthoFinder output from all 47 species
Dac_g06510 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Dac_g36557 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g10360 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Dde_g30317 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g17161 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g22125 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g24256 RAP2.7, TOE1 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g30529 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01009293001 DRG, CKC, CKC1, ANT RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
GSVIVT01009294001 DRG, CKC, CKC1, ANT AP2-like ethylene-responsive transcription factor ANT... 0.03 OrthoFinder output from all 47 species
GSVIVT01016764001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
GSVIVT01025307001 PLT2 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
GSVIVT01029219001 AIL5, EMK, CHO1 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
Gb_29561 No alias transcription factor (AP2) 0.03 OrthoFinder output from all 47 species
LOC_Os03g12950.1 DRG, CKC, CKC1,... no description available(sp|q84z02|crl5_orysj : 102.0) 0.04 OrthoFinder output from all 47 species
LOC_Os03g56050.1 DRG, CKC, CKC1,... transcription factor (AP2) 0.02 OrthoFinder output from all 47 species
LOC_Os06g43220.1 AP2, FLO2, FL1,... transcription factor (AP2) 0.02 OrthoFinder output from all 47 species
LOC_Os07g03250.1 DRG, CKC, CKC1,... transcription factor (AP2) 0.03 OrthoFinder output from all 47 species
LOC_Os07g13170.2 RAP2.7, TOE1,... transcription factor (AP2) 0.03 OrthoFinder output from all 47 species
Len_g44143 No alias RAM1-dependent transcription factor *(WRI5) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g10876 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Mp7g13270.1 ADAP transcription factor (AP2) 0.02 OrthoFinder output from all 47 species
Mp8g11450.1 No alias transcription factor (AP2) 0.02 OrthoFinder output from all 47 species
Nbi_g01472 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g14049 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g29022 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ore_g19237 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ore_g27835 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Pir_g12863 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Pir_g17715 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Pir_g24109 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Sam_g09902 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36453 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Solyc02g092050.3.1 DRG, CKC, CKC1,... transcription factor (AP2) 0.02 OrthoFinder output from all 47 species
Solyc03g123430.4.1 Solyc03g123430 transcription factor (AP2) 0.03 OrthoFinder output from all 47 species
Solyc04g077490.3.1 DRG, CKC, CKC1,... transcription factor (AP2) 0.04 OrthoFinder output from all 47 species
Solyc11g010710.2.1 PLT3, AIL6,... transcription factor (AP2) 0.02 OrthoFinder output from all 47 species
Zm00001e006752_P001 AP2, FLO2, FL1,... transcription factor (AP2) 0.03 OrthoFinder output from all 47 species
Zm00001e032754_P003 DRG, CKC, CKC1,... transcription factor (AP2) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!