Sam_g05003

Description : not classified & original description: none

Gene families : OG0002896 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002896_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g05003
Cluster	HCCA: Cluster_12

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00259490	THIC, PY,...	Coenzyme metabolism.thiamine pyrophosphate...	0.03	OrthoFinder output from all 47 species
Aop_g04895	THIC, PY	hydroxymethylpyrimidine phosphate synthase *(ThiC) &...	0.03	OrthoFinder output from all 47 species
Aop_g21432	THIC, PY	hydroxymethylpyrimidine phosphate synthase *(ThiC) &...	0.02	OrthoFinder output from all 47 species
Ceric.03G079100.1	THIC, PY, Ceric.03G079100	hydroxymethylpyrimidine phosphate synthase *(ThiC) &...	0.06	OrthoFinder output from all 47 species
GSVIVT01024789001	THIC, PY	Coenzyme metabolism.thiamine pyrophosphate...	0.02	OrthoFinder output from all 47 species
LOC_Os03g47610.6	THIC, PY, LOC_Os03g47610	hydroxymethylpyrimidine phosphate synthase (ThiC)	0.02	OrthoFinder output from all 47 species
Len_g30576	THIC, PY	hydroxymethylpyrimidine phosphate synthase *(ThiC) &...	0.02	OrthoFinder output from all 47 species
Pir_g08855	THIC, PY	hydroxymethylpyrimidine phosphate synthase *(ThiC) &...	0.03	OrthoFinder output from all 47 species
Smo120890	THIC, PY	Coenzyme metabolism.thiamine pyrophosphate...	0.03	OrthoFinder output from all 47 species
Smo152730	THIC, PY	Coenzyme metabolism.thiamine pyrophosphate...	0.03	OrthoFinder output from all 47 species
Smo418436	THIC, PY	Coenzyme metabolism.thiamine pyrophosphate...	0.04	OrthoFinder output from all 47 species
Solyc06g006080.3.1	THIC, PY, Solyc06g006080	hydroxymethylpyrimidine phosphate synthase (ThiC)	0.03	OrthoFinder output from all 47 species
Zm00001e005154_P001	THIC, PY, Zm00001e005154	hydroxymethylpyrimidine phosphate synthase (ThiC)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006066	alcohol metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006766	vitamin metabolic process	None	Extended
BP	GO:0006767	water-soluble vitamin metabolic process	None	Extended
BP	GO:0006772	thiamine metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009110	vitamin biosynthetic process	None	Extended
BP	GO:0009228	thiamine biosynthetic process	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0034308	primary alcohol metabolic process	None	Extended
BP	GO:0034309	primary alcohol biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042364	water-soluble vitamin biosynthetic process	None	Extended
BP	GO:0042723	thiamine-containing compound metabolic process	None	Extended
BP	GO:0042724	thiamine-containing compound biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046165	alcohol biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0051536	iron-sulfur cluster binding	IEA	Interproscan
MF	GO:0051540	metal cluster binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002817	ThiC/BzaA/B	1	88

External Links

No external refs found!

Sam_g05003

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation