Sam_g01375


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g01375

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00156450 REME1,... Pentatricopeptide repeat-containing protein At2g03880,... 0.02 OrthoFinder output from all 47 species
AMTR_s00046p00214930 CRR22,... Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Adi_g004364 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g27991 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36027 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36540 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05671 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05672 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g31716 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04243 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16810 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02996.t1 CRR2, Aspi01Gene02996 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene04806.t1 Aspi01Gene04806 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18627.t1 Aspi01Gene18627 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene20496.t1 CRR22, Aspi01Gene20496 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene23472.t1 CRR22, Aspi01Gene23472 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene35275.t1 Aspi01Gene35275 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene36977.t1 Aspi01Gene36977 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene42015.t1 Aspi01Gene42015 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene43552.t1 Aspi01Gene43552 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene56416.t1 CRR22, Aspi01Gene56416 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0068.g036254 No alias not classified & original description: CDS=1-1464 0.04 OrthoFinder output from all 47 species
Azfi_s0082.g038688 No alias not classified & original description: CDS=1-3078 0.04 OrthoFinder output from all 47 species
Azfi_s1334.g101644 No alias not classified & original description: CDS=1-3543 0.04 OrthoFinder output from all 47 species
Azfi_s4317.g118724 No alias not classified & original description: CDS=1-465 0.04 OrthoFinder output from all 47 species
Cba_g19886 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g22830 OSB4 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G084700.1 VAC1, ECB2,... not classified & original description: pacid=50592179... 0.03 OrthoFinder output from all 47 species
Ceric.03G011400.1 Ceric.03G011400 not classified & original description: pacid=50571389... 0.03 OrthoFinder output from all 47 species
Ceric.05G086700.1 Ceric.05G086700 not classified & original description: pacid=50579096... 0.05 OrthoFinder output from all 47 species
Ceric.12G084700.1 Ceric.12G084700 not classified & original description: pacid=50602071... 0.03 OrthoFinder output from all 47 species
Ceric.17G033700.1 VAC1, ECB2,... not classified & original description: pacid=50617387... 0.03 OrthoFinder output from all 47 species
Ceric.18G000100.1 CRR22, Ceric.18G000100 ssDNA-binding protein *(OSB) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.31G069700.1 CRR21, Ceric.31G069700 not classified & original description: pacid=50574812... 0.03 OrthoFinder output from all 47 species
Ceric.33G050800.1 CRR22, Ceric.33G050800 not classified & original description: pacid=50606654... 0.02 OrthoFinder output from all 47 species
Ceric.36G001100.1 Ceric.36G001100 not classified & original description: pacid=50568746... 0.03 OrthoFinder output from all 47 species
Dac_g23318 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06433 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g10087 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04314 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26464 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g36360 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g36368 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50967 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19510 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_03693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Gb_15811 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.03 OrthoFinder output from all 47 species
Gb_28343 OTP84 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
LOC_Os01g28570.1 LOC_Os01g28570 Pentatricopeptide repeat-containing protein At3g49710... 0.03 OrthoFinder output from all 47 species
LOC_Os02g01610.1 LOC_Os02g01610 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os05g50950.1 LOC_Os05g50950 Pentatricopeptide repeat-containing protein At4g01030,... 0.04 OrthoFinder output from all 47 species
LOC_Os07g02280.1 LOC_Os07g02280 RNA editing factor (OTP80) 0.02 OrthoFinder output from all 47 species
Len_g00981 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18600 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18999 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g20662 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g26311 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g27339 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
MA_210823g0010 EMB2261 Pentatricopeptide repeat-containing protein At4g37170... 0.02 OrthoFinder output from all 47 species
Msp_g13610 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17108 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17711 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g35017 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g48395 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13575 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27846 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g30106 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g40735 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g12671 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29175 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35928 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g45078 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05441 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c17_4890V3.1 Pp3c17_4890 mitochondrial editing factor 22 0.01 OrthoFinder output from all 47 species
Ppi_g04704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14452 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57818 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0223.g026268 No alias not classified & original description: CDS=1-2328 0.02 OrthoFinder output from all 47 species
Sam_g02933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g05036 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16320 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g065840.3.1 OSB1, Solyc09g065840 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
Solyc11g017370.3.1 Solyc11g017370 RNA editing factor (AEF1) 0.03 OrthoFinder output from all 47 species
Spa_g56457 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06658 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13178 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 585 605
IPR002885 Pentatricopeptide_repeat 513 543
IPR002885 Pentatricopeptide_repeat 206 254
IPR002885 Pentatricopeptide_repeat 106 153
IPR002885 Pentatricopeptide_repeat 409 457
IPR002885 Pentatricopeptide_repeat 308 349
No external refs found!