Description : component *(RPP2) of large ribosomal-subunit (LSU) proteome & original description: none
Gene families : OG0000215 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000215_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Sam_g00046 | |
Cluster | HCCA: Cluster_137 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00071p00177850 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.03 | OrthoFinder output from all 47 species | |
AT2G27710 | No alias | 60S acidic ribosomal protein family | 0.05 | OrthoFinder output from all 47 species | |
AT2G27720 | No alias | 60S acidic ribosomal protein family | 0.04 | OrthoFinder output from all 47 species | |
AT3G44590 | No alias | 60S acidic ribosomal protein family | 0.04 | OrthoFinder output from all 47 species | |
Adi_g118574 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Adi_g120750 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g31631 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Als_g24871 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
Als_g55993 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.08 | OrthoFinder output from all 47 species | |
Als_g63181 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Aob_g18712 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g06840 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Aop_g54753 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.07 | OrthoFinder output from all 47 species | |
Cre02.g143050 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g03976 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g32367 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g31241 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g16099 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01031366001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01033814001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.04 | OrthoFinder output from all 47 species | |
Gb_39007 | No alias | component RPP2 of LSU proteome component | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os02g32760.1 | LOC_Os02g32760 | component RPP2 of LSU proteome component | 0.02 | OrthoFinder output from all 47 species | |
MA_177584g0010 | No alias | component RPP2 of LSU proteome component | 0.02 | OrthoFinder output from all 47 species | |
MA_8598039g0010 | No alias | component RPP2 of LSU proteome component | 0.02 | OrthoFinder output from all 47 species | |
Mp1g06260.1 | No alias | component RPP2 of LSU proteome component | 0.04 | OrthoFinder output from all 47 species | |
Mp1g08160.1 | No alias | component RPP2 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
Msp_g40276 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Nbi_g37802 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Pir_g02415 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Pir_g37039 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Pp3c1_27060V3.1 | Pp3c1_27060 | 60S acidic ribosomal protein family | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g21789 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g41562 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g47734 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g50056 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0038.g012004 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g05319 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g22627 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.09 | OrthoFinder output from all 47 species | |
Sam_g23353 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g23854 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.1 | OrthoFinder output from all 47 species | |
Sam_g38961 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Sam_g40093 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Sam_g40309 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g44452 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g45942 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
Sam_g48423 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Smo139397 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.03 | OrthoFinder output from all 47 species | |
Solyc11g067100.2.1 | Solyc11g067100 | component RPP2 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
Spa_g40832 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Spa_g42923 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g12451 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g21399 | No alias | component *(RPP2) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e026591_P001 | Zm00001e026591 | component RPP2 of LSU proteome component | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e026592_P001 | Zm00001e026592 | component RPP2 of LSU proteome component | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e026593_P001 | Zm00001e026593 | component RPP2 of LSU proteome component | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e041900_P001 | Zm00001e041900 | component RPP2 of LSU proteome component | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005743 | mitochondrial inner membrane | IEP | HCCA |
CC | GO:0005840 | ribosome | IEP | HCCA |
BP | GO:0006412 | translation | IEP | HCCA |
BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0006848 | pyruvate transport | IEP | HCCA |
BP | GO:0006850 | mitochondrial pyruvate transmembrane transport | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
BP | GO:0009058 | biosynthetic process | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0015711 | organic anion transport | IEP | HCCA |
BP | GO:0015718 | monocarboxylic acid transport | IEP | HCCA |
BP | GO:0015849 | organic acid transport | IEP | HCCA |
MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
CC | GO:0019866 | organelle inner membrane | IEP | HCCA |
CC | GO:0031090 | organelle membrane | IEP | HCCA |
CC | GO:0031966 | mitochondrial membrane | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
BP | GO:0043603 | amide metabolic process | IEP | HCCA |
BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:0046942 | carboxylic acid transport | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
BP | GO:1901475 | pyruvate transmembrane transport | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
BP | GO:1903825 | organic acid transmembrane transport | IEP | HCCA |
BP | GO:1905039 | carboxylic acid transmembrane transport | IEP | HCCA |
BP | GO:1990542 | mitochondrial transmembrane transport | IEP | HCCA |
No InterPro domains available for this sequence
No external refs found! |