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  5. Aob_g42378

Aob_g42378


Description : snRNP-associated protein *(SR140) & original description: none


Gene families : OG0003274 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003274_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g42378

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00064p00173090 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Adi_g026303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g059804 No alias snRNP-associated protein *(SR140) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02691 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01963 No alias snRNP-associated protein *(SR140) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21519 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G097400.1 Ceric.14G097400 snRNP-associated protein *(SR140) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g04985 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10046 No alias snRNP-associated protein *(SR140) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26474 No alias snRNP-associated protein *(SR140) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g29046 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01035985001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Gb_20698 No alias Protein RRC1 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Len_g31360 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Mp6g17130.1 No alias snRNP-associated protein (SR140) 0.05 OrthoFinder output from all 47 species
Ore_g09321 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g02308 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g26461 No alias snRNP-associated protein *(SR140) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g17022 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g08483 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12506 No alias snRNP-associated protein *(SR140) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g07962 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013823_P001 Zm00001e013823 snRNP-associated protein (SR140) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 202 274
IPR013170 mRNA_splic_Cwf21_dom 945 990
IPR006569 CID_dom 518 646
IPR000061 Surp 349 378
IPR000061 Surp 400 452
No external refs found!