Aob_g39991 (ATRDRP1, RDR1)

Aliases : ATRDRP1, RDR1

Description : not classified & original description: none

Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aob_g39991

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00078p00055040	SDE1, RDR6,...	RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase	0.02	OrthoFinder output from all 47 species
Cba_g14760	SDE1, RDR6, SGS2	ssRNA polymerase *(RDR6) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g04117	SDE1, RDR6, SGS2	ssRNA polymerase *(RDR6) & original description: none	0.04	OrthoFinder output from all 47 species
Gb_12326	SDE1, RDR6, SGS2	ssRNA polymerase (RDR6)	0.04	OrthoFinder output from all 47 species
LOC_Os04g39160.1	SMD1, RDR2,...	ssRNA polymerase (RDR2)	0.06	OrthoFinder output from all 47 species
Nbi_g28892	SMD1, RDR2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g17422	SDE1, RDR6, SGS2	ssRNA polymerase *(RDR6) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g01395	SDE1, RDR6, SGS2	ssRNA polymerase *(RDR6) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g10285	SMD1, RDR2	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003968	RNA-dependent RNA polymerase activity	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007855	RNA-dep_RNA_pol_euk-typ	408	991

External Links

No external refs found!