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  5. Lfl_g24928

Lfl_g24928


Description : component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex & original description: none


Gene families : OG0005027 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005027_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g24928

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00157660 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
AMTR_s00024p00239810 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Adi_g024474 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.05 OrthoFinder output from all 47 species
Aop_g12459 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.03 OrthoFinder output from all 47 species
Azfi_s0280.g062281 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000382.38 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre10.g417950 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Dac_g15659 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.03 OrthoFinder output from all 47 species
Ehy_g04956 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.02 OrthoFinder output from all 47 species
Mp2g26050.1 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.03 OrthoFinder output from all 47 species
Nbi_g41614 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.04 OrthoFinder output from all 47 species
Sam_g10421 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.02 OrthoFinder output from all 47 species
Spa_g15419 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.03 OrthoFinder output from all 47 species
Zm00001e017600_P002 Zm00001e017600 component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034511 U3 snoRNA binding IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 452 485
IPR001680 WD40_repeat 697 732
IPR001680 WD40_repeat 748 787
IPR012953 BOP1_N_dom 191 447
No external refs found!