Aliases : ATHMG, HMG, SSRP1, NFD
Description : not classified & original description: none
Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Lfl_g24838 | |
Cluster | HCCA: Cluster_47 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00023p00232620 | evm_27.TU.AmTr_v1... | High mobility group B protein 6 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
AMTR_s00029p00240750 | NFD03, HMGB3,... | High mobility group B protein 1 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
AMTR_s00044p00160130 | NFD03, HMGB3,... | HMG1/2-like protein OS=Glycine max | 0.02 | OrthoFinder output from all 47 species | |
Adi_g024480 | NFD03, HMGB3, NFD3 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g36476 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Als_g44161 | ATHMG, HMG, SSRP1, NFD | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Cba_g11082 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.07G004800.1 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Cre11.g480950 | ATHMG, HMG, SSRP1, NFD | No description available | 0.01 | OrthoFinder output from all 47 species | |
Dac_g31445 | ATHMG, HMG, SSRP1, NFD | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g25464 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Ehy_g09616 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g18887 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g20583 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os06g51220.2 | NFD2, HMG BETA... | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
MA_75417g0010 | NFD2, HMG BETA... | HMG1/2-like protein OS=Glycine max (sp|p26585|hmgl_soybn : 88.2) | 0.02 | OrthoFinder output from all 47 species | |
Msp_g35147 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.01 | OrthoFinder output from all 47 species | |
Ore_g26780 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g11840 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g49491 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Spa_g38495 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Tin_g33504 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e020222_P001 | Zm00001e020222 | High mobility group B protein 14 OS=Arabidopsis thaliana... | 0.01 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000272 | polysaccharide catabolic process | IEP | HCCA |
MF | GO:0003746 | translation elongation factor activity | IEP | HCCA |
CC | GO:0005778 | peroxisomal membrane | IEP | HCCA |
CC | GO:0005886 | plasma membrane | IEP | HCCA |
BP | GO:0005976 | polysaccharide metabolic process | IEP | HCCA |
BP | GO:0006414 | translational elongation | IEP | HCCA |
BP | GO:0006952 | defense response | IEP | HCCA |
BP | GO:0006996 | organelle organization | IEP | HCCA |
MF | GO:0009678 | pyrophosphate hydrolysis-driven proton transmembrane transporter activity | IEP | HCCA |
MF | GO:0015078 | proton transmembrane transporter activity | IEP | HCCA |
CC | GO:0016020 | membrane | IEP | HCCA |
BP | GO:0016052 | carbohydrate catabolic process | IEP | HCCA |
MF | GO:0016160 | amylase activity | IEP | HCCA |
MF | GO:0016161 | beta-amylase activity | IEP | HCCA |
CC | GO:0016469 | proton-transporting two-sector ATPase complex | IEP | HCCA |
CC | GO:0016471 | vacuolar proton-transporting V-type ATPase complex | IEP | HCCA |
BP | GO:0016559 | peroxisome fission | IEP | HCCA |
MF | GO:0019829 | ATPase-coupled monoatomic cation transmembrane transporter activity | IEP | HCCA |
MF | GO:0022853 | active monoatomic ion transmembrane transporter activity | IEP | HCCA |
CC | GO:0031090 | organelle membrane | IEP | HCCA |
CC | GO:0031903 | microbody membrane | IEP | HCCA |
CC | GO:0033176 | proton-transporting V-type ATPase complex | IEP | HCCA |
BP | GO:0034220 | monoatomic ion transmembrane transport | IEP | HCCA |
CC | GO:0042579 | microbody | IEP | HCCA |
MF | GO:0042625 | ATPase-coupled ion transmembrane transporter activity | IEP | HCCA |
MF | GO:0042626 | ATPase-coupled transmembrane transporter activity | IEP | HCCA |
MF | GO:0044769 | ATPase activity, coupled to transmembrane movement of ions, rotational mechanism | IEP | HCCA |
MF | GO:0046961 | proton-transporting ATPase activity, rotational mechanism | IEP | HCCA |
BP | GO:0048285 | organelle fission | IEP | HCCA |
CC | GO:0098588 | bounding membrane of organelle | IEP | HCCA |
BP | GO:0098655 | monoatomic cation transmembrane transport | IEP | HCCA |
BP | GO:0098660 | inorganic ion transmembrane transport | IEP | HCCA |
BP | GO:0098662 | inorganic cation transmembrane transport | IEP | HCCA |
BP | GO:1902600 | proton transmembrane transport | IEP | HCCA |
CC | GO:1904949 | ATPase complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR009071 | HMG_box_dom | 37 | 105 |
No external refs found! |