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Aliases : ATUPF3, UPF3
Description : component *(UPF3) of RNA quality control Exon Junction complex & original description: none
Gene families : OG0002175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002175_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Adi_g019348 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g21603 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g05619 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g38478 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.07G016200.1 | ATUPF3, UPF3,... | component *(UPF3) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g01686 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g19724 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01023232001 | ATUPF3, UPF3 | RNA processing.RNA quality control Exon Junction complex... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os04g35920.2 | ATUPF3, UPF3,... | component UPF3 of RNA quality control Exon Junction complex | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g04941 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| MA_102917g0010 | ATUPF3, UPF3 | component UPF3 of RNA quality control Exon Junction complex | 0.03 | OrthoFinder output from all 47 species | |
| Mp1g05590.1 | ATUPF3, UPF3 | component UPF3 of RNA quality control Exon Junction complex | 0.01 | OrthoFinder output from all 47 species | |
| Ore_g26306 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g30459 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g30090 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g54665 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g27087 | No alias | component *(UPF3) of RNA quality control Exon Junction... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g35984 | No alias | component *(UPF3) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
| Smo97155 | ATUPF3, UPF3 | RNA processing.RNA quality control Exon Junction complex... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc10g044450.3.1 | ATUPF3, UPF3,... | component UPF3 of RNA quality control Exon Junction complex | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g17421 | No alias | component *(UPF3) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g09311 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| CC | GO:0005643 | nuclear pore | IEP | HCCA |
| BP | GO:0006766 | vitamin metabolic process | IEP | HCCA |
| BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | HCCA |
| BP | GO:0006771 | riboflavin metabolic process | IEP | HCCA |
| MF | GO:0008686 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | IEP | HCCA |
| BP | GO:0009110 | vitamin biosynthetic process | IEP | HCCA |
| BP | GO:0009231 | riboflavin biosynthetic process | IEP | HCCA |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | HCCA |
| BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | HCCA |
| BP | GO:0042726 | flavin-containing compound metabolic process | IEP | HCCA |
| BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR005120 | UPF3_dom | 98 | 263 |
| No external refs found! |