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  5. AMTR_s00027p00246860

AMTR_s00027p00246860 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00027.158

Description : Endoglucanase 23 OS=Oryza sativa subsp. japonica


Gene families : OG_01_0000093 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000093_tree ,
OG_02_0000198 (LandPlants) Phylogenetic Tree(s): OG_02_0000198_tree ,
OG_03_0000304 (SeedPlants) Phylogenetic Tree(s): OG_03_0000304_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00027p00246860
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00070580 evm_27.TU.AmTr_v1... Endoglucanase 3 OS=Arabidopsis thaliana 0.04 Archaeplastida
AT1G70710 CEL1, GH9B1, ATGH9B1 glycosyl hydrolase 9B1 0.02 Archaeplastida
GSVIVT01018619001 No alias Endoglucanase 8 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01019420001 No alias Endoglucanase OS=Phaseolus vulgaris 0.03 Archaeplastida
GSVIVT01019523001 No alias Endoglucanase 6 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01037210001 No alias Cell wall.cellulose.degradation.endo-1,4-beta-glucanase 0.04 Archaeplastida
Gb_26728 No alias Endoglucanase 19 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os01g12030.1 No alias Endoglucanase 1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os01g21070.1 No alias Endoglucanase 3 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os02g53820.1 No alias Endoglucanase 8 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os06g14540.1 No alias Endoglucanase 17 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os08g29770.1 No alias Endoglucanase 20 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Pp3c13_24600V3.1 No alias glycosyl hydrolase 9C2 0.04 Archaeplastida
Pp3c4_23640V3.1 No alias glycosyl hydrolase 9B7 0.02 Archaeplastida
Pp3c5_9540V3.1 No alias glycosyl hydrolase 9A1 0.04 Archaeplastida
Pp3c6_25940V3.1 No alias glycosyl hydrolase 9C2 0.03 Archaeplastida
Smo109529 No alias Endoglucanase 19 OS=Arabidopsis thaliana 0.03 Archaeplastida
Smo234652 No alias Endoglucanase 6 OS=Arabidopsis thaliana 0.04 Archaeplastida
Solyc03g083820.3.1 No alias Endoglucanase 8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc08g083210.3.1 No alias Endoglucanase 1 OS=Persea americana... 0.02 Archaeplastida
Solyc11g040340.3.1 No alias endo-1,4-beta-glucanase 0.03 Archaeplastida
AMTR_s00018p00255530 evm_27.TU.AmTr_v1... Endoglucanase 1 OS=Persea americana 0.03 LandPlants
AMTR_s00099p00070580 evm_27.TU.AmTr_v1... Endoglucanase 3 OS=Arabidopsis thaliana 0.04 LandPlants
GSVIVT01037210001 No alias Cell wall.cellulose.degradation.endo-1,4-beta-glucanase 0.04 LandPlants
LOC_Os06g14540.1 No alias Endoglucanase 17 OS=Oryza sativa subsp. japonica... 0.03 LandPlants
MA_480961g0010 No alias Endoglucanase 8 OS=Arabidopsis thaliana... 0.04 LandPlants
MA_697188g0010 No alias Endoglucanase 17 OS=Arabidopsis thaliana... 0.04 LandPlants
AMTR_s00018p00255530 evm_27.TU.AmTr_v1... Endoglucanase 1 OS=Persea americana 0.03 SeedPlants
AMTR_s00099p00070580 evm_27.TU.AmTr_v1... Endoglucanase 3 OS=Arabidopsis thaliana 0.04 SeedPlants
GSVIVT01037210001 No alias Cell wall.cellulose.degradation.endo-1,4-beta-glucanase 0.02 SeedPlants
Gb_21395 No alias endo-1,4-beta-glucanase 0.02 SeedPlants
LOC_Os01g21070.1 No alias Endoglucanase 3 OS=Oryza sativa subsp. japonica... 0.01 SeedPlants
LOC_Os06g14540.1 No alias Endoglucanase 17 OS=Oryza sativa subsp. japonica... 0.03 SeedPlants
MA_480961g0010 No alias Endoglucanase 8 OS=Arabidopsis thaliana... 0.04 SeedPlants
MA_5355g0010 No alias Endoglucanase 8 OS=Arabidopsis thaliana... 0.01 SeedPlants
MA_697188g0010 No alias Endoglucanase 17 OS=Arabidopsis thaliana... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001701 Glyco_hydro_9 29 484
No external refs found!