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  5. Aob_g32107

Aob_g32107 (ATPUB17, PUB17)


Aliases : ATPUB17, PUB17

Description : E3 ubiquitin ligase & original description: none


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g32107

Target Alias Description ECC score Gene Family Method Actions
Adi_g009234 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g102535 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26320 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g02580 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19264 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03347 PUB14, ATPUB14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os06g51130.1 PUB15, LOC_Os06g51130 U-box domain-containing protein 15 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_129765g0010 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula... 0.02 OrthoFinder output from all 47 species
Sam_g24702 No alias E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g050780.2.1 PUB9, ATPUB9,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Solyc11g066040.2.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Zm00001e013323_P001 PUB15, Zm00001e013323 U-box domain-containing protein 15 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e019429_P001 Zm00001e019429 U-box domain-containing protein 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 293 363
IPR000225 Armadillo 425 462
IPR000225 Armadillo 550 587
IPR000225 Armadillo 512 546
No external refs found!