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  5. Aob_g31350

Aob_g31350


Description : component *(Symplekin/Pta1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none


Gene families : OG0002204 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002204_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g31350

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00088050 ESP4,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
LOC_Os07g49320.1 ESP4, LOC_Os07g49320 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Lfl_g06265 No alias component *(Symplekin/Pta1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
MA_433916g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ore_g27266 No alias component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Smo442688 ESP4 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
Solyc04g076910.3.1 Solyc04g076910 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Solyc09g005330.3.1 ESP4, Solyc09g005330 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Solyc09g005340.3.1 ESP4, Solyc09g005340 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Zm00001e035946_P001 ESP4, Zm00001e035946 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003872 6-phosphofructokinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR032460 Symplekin/Pta1_N 104 322
IPR022075 Symplekin_C 1137 1313
No external refs found!