ECC pair

    Aob_g31169 details
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    3. Abrodictyum obscurum
    4. Sequence
    5. Aob_g31169

    Aob_g31169 (KNAT5)


    Aliases : KNAT5

    Description : not classified & original description: none


    Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

    Sequence : coding (download), protein (download)


    Attention: This gene has low abundance.


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    Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


    Type Description Actions
    Neighborhood HRR: Aob_g31169

    Target Alias Description ECC score Gene Family Method Actions
    Aspi01Gene56442.t2 KNAT3, Aspi01Gene56442 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
    Ceric.20G046300.1 BUM1, SHL, STM,... KNOX-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
    Dcu_g28016 KNAT3 KNOX-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
    Ore_g35975 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
    Pp3c18_18720V3.1 BUM1, SHL, STM,... KNOTTED-like from Arabidopsis thaliana 2 0.02 OrthoFinder output from all 47 species
    Pp3c18_18750V3.1 Pp3c18_18750 KNOTTED1-like homeobox gene 6 0.01 OrthoFinder output from all 47 species
    Pp3c19_5610V3.1 Pp3c19_5610 No annotation 0.01 OrthoFinder output from all 47 species
    Pp3c19_5620V3.1 BP, BP1, KNAT1,... KNOTTED-like from Arabidopsis thaliana 2 0.01 OrthoFinder output from all 47 species
    Pp3c21_10320V3.1 BUM1, SHL, STM,... KNOTTED-like from Arabidopsis thaliana 2 0.01 OrthoFinder output from all 47 species
    Sam_g23106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Sam_g47381 No alias KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
    Solyc01g100510.4.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
    Solyc02g081120.4.1 BUM1, SHL, STM,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
    Solyc03g112740.2.1 KNAT2, ATK1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
    Zm00001e011538_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
    Zm00001e017489_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
    Zm00001e027562_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
    Zm00001e032761_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species

    Type GO Term Name Evidence Source
    MF
  • Edge ColorGO:0003677
    		•  DNA binding IEA Interproscan
    CC GO:0005634 nucleus IEA Interproscan
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    Type GO Term Name Evidence Source

    No Predicted GO terms available for this sequence
    InterPro domains Description Start Stop
    IPR005540 KNOX1 17 36
    IPR005541 KNOX2 68 117
    No external refs found!