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Aob_g28239 (PUM1, APUM1)


Aliases : PUM1, APUM1

Description : not classified & original description: none


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g28239
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AT2G29200 PUM1, APUM1 pumilio 1 0.03 OrthoFinder output from all 47 species
Aev_g07329 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16848 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g61874 APUM4, PUM4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene56545.t1 PUM3, APUM3,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12103 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g27807 PUM3, APUM3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g74030.1 PUM1, APUM1,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os04g12480.1 APUM4, PUM4,... Pumilio homolog 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os09g32210.1 APUM6, PUM6,... Pumilio homolog 5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Nbi_g08859 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15133 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003598_P001 PUM5, APUM5,... Pumilio homolog 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e027653_P001 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e029661_P001 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0034511 U3 snoRNA binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 1015 1049
IPR001313 Pumilio_RNA-bd_rpt 798 832
IPR001313 Pumilio_RNA-bd_rpt 906 937
IPR001313 Pumilio_RNA-bd_rpt 981 1012
IPR001313 Pumilio_RNA-bd_rpt 1061 1090
IPR001313 Pumilio_RNA-bd_rpt 836 867
IPR001313 Pumilio_RNA-bd_rpt 942 977
IPR001313 Pumilio_RNA-bd_rpt 870 903
IPR012940 NABP 384 793
No external refs found!