1. Home
  2. Species
  3. Abrodictyum obscurum
  4. Sequence
  5. Aob_g28233

Aob_g28233 (CPSF30, ATCPSF30)


Aliases : CPSF30, ATCPSF30

Description : component *(CPSF30/Yth1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none


Gene families : OG0003202 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003202_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g28233

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00079840 CPSF30,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.02 OrthoFinder output from all 47 species
Als_g21038 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Aspi01Gene70856.t1 CPSF30,... component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Azfi_s0232.g059342 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Cba_g03380 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Cba_g04048 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Ceric.1Z025100.1 CPSF30,... component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ceric.29G075600.1 CPSF30,... component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Dcu_g33224 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ehy_g23212 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01021617001 CPSF30, ATCPSF30 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
Gb_34616 CPSF30, ATCPSF30 component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
LOC_Os06g46400.1 CPSF30,... component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Len_g03885 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Mp6g15200.1 CPSF30, ATCPSF30 component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Nbi_g11385 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ore_g30876 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Pir_g42075 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017792 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Sam_g17308 No alias component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Spa_g37920 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.07 OrthoFinder output from all 47 species
Zm00001e012971_P001 CPSF30,... component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR007275 YTH_domain 410 465
IPR007275 YTH_domain 331 393
No external refs found!