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  5. Aob_g28229

Aob_g28229 (CMT2)


Aliases : CMT2

Description : DNA chromomethylase *(CMT) & original description: none


Gene families : OG0002093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002093_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g28229

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00193220 CMT3,... Chromatin organisation.DNA methylation.RNA-independent... 0.03 OrthoFinder output from all 47 species
AMTR_s00048p00181490 CMT2,... Chromatin organisation.DNA methylation.RNA-independent... 0.04 OrthoFinder output from all 47 species
Adi_g014234 CMT2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07783 CMT3 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09491 CMT3 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10939 CMT3 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56300.t1 CMT3, Aspi01Gene56300 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46826 CMT3 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50047 CMT2 DNA chromomethylase *(CMT) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25407 CMT3 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os10g01570.1 CMT3, LOC_Os10g01570 DNA chromomethylase (CMT) 0.02 OrthoFinder output from all 47 species
Len_g07756 CMT3 DNA chromomethylase *(CMT) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g24159 CMT3 DNA chromomethylase *(CMT) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g18656 CMT2 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g24595 CMT2 DNA chromomethylase *(CMT) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0222.g026232 CMT3 DNA chromomethylase *(CMT) & original description: CDS=250-2766 0.02 OrthoFinder output from all 47 species
Solyc01g006100.4.1 CMT3, Solyc01g006100 DNA chromomethylase (CMT) 0.03 OrthoFinder output from all 47 species
Solyc12g100330.2.1 CMT3, Solyc12g100330 DNA chromomethylase (CMT) 0.02 OrthoFinder output from all 47 species
Tin_g07640 CMT3 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10202 CMT3 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0008037 cell recognition IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
InterPro domains Description Start Stop
IPR023780 Chromo_domain 388 441
IPR001025 BAH_dom 112 230
IPR001525 C5_MeTfrase 452 813
No external refs found!