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Aliases : OTP86
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G77010 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT4G39952 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g028250 | LOI1, MEF11 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g036821 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g051856 | RARE1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g18317 | PTAC9, OSB2 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g21708 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g29185 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g07462 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g12969 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g22597 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g32436 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g36478 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g02534 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g09609 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g28410 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g33010 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g38034 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g67578 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g68065 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0027.g023748 | CRR22 | not classified & original description: CDS=1-2115 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0405.g068373 | No alias | not classified & original description: CDS=1-2967 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g20724 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g20779 | EMB2758 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g25491 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Cba_g35120 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g72353 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.11G067400.1 | Ceric.11G067400 | not classified & original description: pacid=50595438... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.12G018600.1 | Ceric.12G018600 | not classified & original description: pacid=50602205... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.15G056400.1 | Ceric.15G056400 | not classified & original description: pacid=50639467... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.16G044900.1 | Ceric.16G044900 | not classified & original description: pacid=50590190... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.1Z110500.1 | Ceric.1Z110500 | not classified & original description: pacid=50639205... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.22G042200.1 | Ceric.22G042200 | not classified & original description: pacid=50614742... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.24G026700.1 | Ceric.24G026700 | not classified & original description: pacid=50628649... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.25G002100.1 | Ceric.25G002100 | not classified & original description: pacid=50593112... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.28G015300.1 | Ceric.28G015300 | not classified & original description: pacid=50570535... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g11806 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g27446 | CRR2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g42750 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g05649 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g26408 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g45907 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g08485 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g50877 | REME1 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g19239 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g60250.1 | LOC_Os01g60250 | Pentatricopeptide repeat-containing protein At3g14730... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g60430.1 | LOC_Os01g60430 | RNA editing factor (MEF10) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os04g58980.1 | LOC_Os04g58980 | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os07g47370.1 | LOC_Os07g47370 | Pentatricopeptide repeat-containing protein At4g32430,... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g17588 | OTP86 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Len_g17788 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g59570 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g07034 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g14202 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g15447 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g19449 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g04447 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g24651 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g41038 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g01896 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g20793 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g03395 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g57077 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g03881 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g18089 | MEF19 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g33120 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g40056 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g42323 | EMB2261 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g43104 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g47516 | OTP85 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g48448 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g16146 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g16664 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g19551 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g34646 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g38692 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g39170 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo61782 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc03g114660.1.1 | Solyc03g114660 | Pentatricopeptide repeat-containing protein At1g18485... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc11g071370.1.1 | PDE247, CLB19,... | RNA editing factor (CLB19) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e013232_P001 | Zm00001e013232 | Pentatricopeptide repeat-containing protein At2g36730... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e014549_P001 | CRR22, Zm00001e014549 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e029819_P003 | CRR22, Zm00001e029819 | RNA editing factor (CRR22) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
| BP | GO:0006553 | lysine metabolic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008652 | amino acid biosynthetic process | IEP | HCCA |
| MF | GO:0008839 | 4-hydroxy-tetrahydrodipicolinate reductase | IEP | HCCA |
| BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | HCCA |
| BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | HCCA |
| BP | GO:0009085 | lysine biosynthetic process | IEP | HCCA |
| BP | GO:0009089 | lysine biosynthetic process via diaminopimelate | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | HCCA |
| MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
| BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
| BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | HCCA |
| BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
| BP | GO:0044283 | small molecule biosynthetic process | IEP | HCCA |
| BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | HCCA |
| BP | GO:0046451 | diaminopimelate metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | HCCA |
| BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 329 | 352 |
| IPR002885 | Pentatricopeptide_repeat | 734 | 757 |
| IPR002885 | Pentatricopeptide_repeat | 534 | 557 |
| IPR002885 | Pentatricopeptide_repeat | 257 | 304 |
| IPR002885 | Pentatricopeptide_repeat | 155 | 202 |
| IPR002885 | Pentatricopeptide_repeat | 560 | 607 |
| IPR002885 | Pentatricopeptide_repeat | 659 | 705 |
| IPR002885 | Pentatricopeptide_repeat | 458 | 504 |
| IPR002885 | Pentatricopeptide_repeat | 358 | 405 |
| No external refs found! |