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  5. Aob_g27280

Aob_g27280


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g27280

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00075660 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00204910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g19191,... 0.03 OrthoFinder output from all 47 species
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 OrthoFinder output from all 47 species
AT3G23330 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G01030 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 OrthoFinder output from all 47 species
AT4G16470 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g013260 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g066134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099166 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g23888 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22711 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g32891 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36524 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36546 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g08304 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.10G012900.1 CRR22, Ceric.10G012900 not classified & original description: pacid=50612392... 0.04 OrthoFinder output from all 47 species
Dac_g21016 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g33128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05342 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g08525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g13830.1 LOC_Os03g13830 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Len_g03784 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07089 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10361 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27549 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g05131 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30311 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g07011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14464 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g33298 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53945 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005124 No alias not classified & original description: CDS=63-833 0.04 OrthoFinder output from all 47 species
Smo105614 CRR2 Pentatricopeptide repeat-containing protein At3g02330,... 0.05 OrthoFinder output from all 47 species
Smo429215 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.02 OrthoFinder output from all 47 species
Smo80280 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.02 OrthoFinder output from all 47 species
Smo95641 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.04 OrthoFinder output from all 47 species
Smo99756 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.02 OrthoFinder output from all 47 species
Tin_g44089 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e003284_P001 Zm00001e003284 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e020567_P001 Zm00001e020567 RNA editing factor (MEF7) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 550 570
IPR002885 Pentatricopeptide_repeat 139 169
IPR002885 Pentatricopeptide_repeat 474 522
IPR002885 Pentatricopeptide_repeat 373 421
IPR002885 Pentatricopeptide_repeat 273 319
IPR002885 Pentatricopeptide_repeat 171 219
IPR046848 E_motif 592 643
No external refs found!