Aliases : FIP1[V], ATFIP1[V], FIPS5, ATFIPS5
Description : component *(Fip1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none
Gene families : OG0001918 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001918_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT5G58040 | FIP1[V],... | homolog of yeast FIP1 [V] | 0.05 | OrthoFinder output from all 47 species | |
Aev_g14836 | FIP1[V],... | component *(Fip1) of Cleavage and Polyadenylation... | 0.05 | OrthoFinder output from all 47 species | |
Ala_g20998 | FIP1[V],... | component *(Fip1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
Als_g05760 | FIP1[V],... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g19308 | FIP1[V],... | component *(Fip1) of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
Als_g26693 | FIP1[V],... | component *(Fip1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g02263 | FIP1[V],... | component *(Fip1) of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
Cba_g04743 | FIP1[V],... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ceric.03G021000.1 | FIP1[V],... | not classified & original description: pacid=50571470... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.31G051000.1 | FIP1[V],... | component *(Fip1) of Cleavage and Polyadenylation... | 0.15 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00021312.38 | No alias | No description available | 0.01 | OrthoFinder output from all 47 species | |
Cre17.g745547 | No alias | No description available | 0.04 | OrthoFinder output from all 47 species | |
Dac_g10619 | FIP1[V],... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g13384 | FIP1[V],... | component *(Fip1) of Cleavage and Polyadenylation... | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g17315 | FIP1[V],... | component *(Fip1) of Cleavage and Polyadenylation... | 0.05 | OrthoFinder output from all 47 species | |
Dde_g17121 | FIP1[V],... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dde_g24035 | FIP1[V],... | component *(Fip1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g16877 | FIP1[V],... | component *(Fip1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01034996001 | FIP1[V],... | FIP1[V]-like protein OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
Gb_32960 | FIP1[V],... | component Fip1 of Cleavage and Polyadenylation... | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os03g51520.1 | FIP1[V],... | component Fip1 of Cleavage and Polyadenylation... | 0.05 | OrthoFinder output from all 47 species | |
Len_g17376 | FIP1[V],... | component *(Fip1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
Len_g58738 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g24352 | FIP1[V],... | component *(Fip1) of Cleavage and Polyadenylation... | 0.05 | OrthoFinder output from all 47 species | |
MA_11233g0040 | No alias | FIP1[V]-like protein OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
MA_140047g0010 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
Mp5g14310.1 | FIP1[V],... | component Fip1 of Cleavage and Polyadenylation... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g22123 | FIP1[V],... | substrate adaptor of CUL3-based E3 ubiquitin ligase... | 0.02 | OrthoFinder output from all 47 species | |
Ore_g43037 | FIP1[V],... | component *(Fip1) of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
Pir_g11415 | FIP1[V],... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pir_g30495 | FIP1[V],... | component *(Fip1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g27134 | FIP1[V],... | component *(Fip1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g03287 | FIP1[V],... | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Sam_g35738 | No alias | component *(Fip1) of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
Solyc07g005320.3.1 | FIP1[V],... | component Fip1 of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
Solyc12g099280.2.1 | FIP1[V],... | FIP1[V]-like protein OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g15696 | FIP1[V],... | component *(Fip1) of Cleavage and Polyadenylation... | 0.02 | OrthoFinder output from all 47 species | |
Tin_g09513 | FIP1[V],... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e001458_P002 | FIP1[V],... | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
CC | GO:0005669 | transcription factor TFIID complex | IEP | HCCA |
CC | GO:0005694 | chromosome | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006996 | organelle organization | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0042274 | ribosomal small subunit biogenesis | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0051276 | chromosome organization | IEP | HCCA |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007854 | Fip1_dom | 441 | 483 |
No external refs found! |