Aob_g26393 (FIP1[V], ATFIP1[V],...)


Aliases : FIP1[V], ATFIP1[V], FIPS5, ATFIPS5

Description : component *(Fip1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none


Gene families : OG0001918 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001918_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g26393

Target Alias Description ECC score Gene Family Method Actions
AT5G58040 FIP1[V],... homolog of yeast FIP1 [V] 0.05 OrthoFinder output from all 47 species
Aev_g14836 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Ala_g20998 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Als_g05760 FIP1[V],... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19308 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Als_g26693 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Aop_g02263 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Cba_g04743 FIP1[V],... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G021000.1 FIP1[V],... not classified & original description: pacid=50571470... 0.03 OrthoFinder output from all 47 species
Ceric.31G051000.1 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.15 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021312.38 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre17.g745547 No alias No description available 0.04 OrthoFinder output from all 47 species
Dac_g10619 FIP1[V],... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g13384 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Dcu_g17315 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Dde_g17121 FIP1[V],... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24035 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ehy_g16877 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
GSVIVT01034996001 FIP1[V],... FIP1[V]-like protein OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_32960 FIP1[V],... component Fip1 of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
LOC_Os03g51520.1 FIP1[V],... component Fip1 of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Len_g17376 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Len_g58738 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g24352 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
MA_11233g0040 No alias FIP1[V]-like protein OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_140047g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp5g14310.1 FIP1[V],... component Fip1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Nbi_g22123 FIP1[V],... substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ore_g43037 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Pir_g11415 FIP1[V],... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g30495 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Pnu_g27134 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ppi_g03287 FIP1[V],... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g35738 No alias component *(Fip1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Solyc07g005320.3.1 FIP1[V],... component Fip1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Solyc12g099280.2.1 FIP1[V],... FIP1[V]-like protein OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g15696 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Tin_g09513 FIP1[V],... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001458_P002 FIP1[V],... no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007854 Fip1_dom 441 483
No external refs found!