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  5. Aob_g24117

Aob_g24117 (RBCS1A)


Aliases : RBCS1A

Description : small subunit of ribulose-1,5-bisphosphat carboxylase/oxygenase heterodimer & original description: none


Gene families : OG0000735 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000735_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g24117

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00079p00061090 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
AT1G67090 RBCS1A ribulose bisphosphate carboxylase small chain 1A 0.05 OrthoFinder output from all 47 species
AT5G38410 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.09 OrthoFinder output from all 47 species
AT5G38420 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.05 OrthoFinder output from all 47 species
AT5G38430 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.05 OrthoFinder output from all 47 species
Aspi01Gene45745.t1 RBCS1A, Aspi01Gene45745 small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Cba_g39071 No alias small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Ceric.09G050600.1 RBCS1A, Ceric.09G050600 small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Ceric.09G050800.1 RBCS1A, Ceric.09G050800 small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Ceric.09G050900.1 RBCS1A, Ceric.09G050900 small subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
Ceric.09G051100.1 RBCS1A, Ceric.09G051100 small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Ceric.09G051300.1 RBCS1A, Ceric.09G051300 small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Ceric.09G051400.1 RBCS1A, Ceric.09G051400 small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Ceric.09G051600.1 RBCS1A, Ceric.09G051600 small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Ceric.09G051800.1 RBCS1A, Ceric.09G051800 small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Dcu_g20638 No alias small subunit of ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
Dcu_g33446 No alias small subunit of ribulose-1,5-bisphosphat... 0.09 OrthoFinder output from all 47 species
Dcu_g51202 No alias small subunit of ribulose-1,5-bisphosphat... 0.09 OrthoFinder output from all 47 species
Dde_g36766 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Ehy_g04204 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
GSVIVT01008288001 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Gb_00380 No alias small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Gb_00381 No alias small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
LOC_Os12g17600.1 RBCS1A, LOC_Os12g17600 small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
LOC_Os12g19381.1 RBCS1A, LOC_Os12g19381 small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Lfl_g18439 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Lfl_g31310 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
MA_47626g0010 No alias small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Mp4g06020.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Mp4g06050.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Mp4g10850.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Mp4g15070.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Nbi_g16796 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Pir_g54622 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Pnu_g12024 No alias small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Pp3c19_1840V3.1 RBCS1A, Pp3c19_1840 Ribulose bisphosphate carboxylase (small chain) family protein 0.03 OrthoFinder output from all 47 species
Pp3c3_14510V3.1 RBCS1A, Pp3c3_14510 ribulose bisphosphate carboxylase small chain 1A 0.06 OrthoFinder output from all 47 species
Pp3c3_20140V3.1 RBCS1A, Pp3c3_20140 ribulose bisphosphate carboxylase small chain 1A 0.02 OrthoFinder output from all 47 species
Ppi_g32726 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0124.g021603 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Sam_g23016 No alias small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Sam_g36381 No alias small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Solyc02g063150.3.1 Solyc02g063150 small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Solyc02g085950.4.1 Solyc02g085950 small subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR000894 RuBisCO_ssu_dom 65 174
No external refs found!