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  5. AMTR_s00002p00236530

AMTR_s00002p00236530 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.279

Description : CDK5RAP1-like protein OS=Oryza sativa subsp. japonica


Gene families : OG_01_0003172 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003172_tree ,
OG_02_0006596 (LandPlants) Phylogenetic Tree(s): OG_02_0006596_tree ,
OG_03_0006635 (SeedPlants) Phylogenetic Tree(s): OG_03_0006635_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00236530
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AT4G36390 No alias Methylthiotransferase 0.04 Archaeplastida
GSVIVT01018858001 No alias CDK5RAP1-like protein OS=Arabidopsis thaliana 0.07 Archaeplastida
Gb_31461 No alias CDK5RAP1-like protein OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os11g38030.1 No alias CDK5RAP1-like protein OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
MA_10426631g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp3g13110.1 No alias CDK5RAP1-like protein OS=Oryza sativa subsp. japonica... 0.09 Archaeplastida
Pp3c3_14130V3.1 No alias Methylthiotransferase 0.07 Archaeplastida
Solyc02g084750.4.1 No alias CDK5RAP1-like protein OS=Arabidopsis thaliana... 0.06 Archaeplastida
Zm00001e011273_P001 No alias CDK5RAP1-like protein OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
AT4G36390 No alias Methylthiotransferase 0.03 LandPlants
GSVIVT01018858001 No alias CDK5RAP1-like protein OS=Arabidopsis thaliana 0.06 LandPlants
Gb_31461 No alias CDK5RAP1-like protein OS=Oryza sativa subsp. japonica... 0.03 LandPlants
LOC_Os11g38030.1 No alias CDK5RAP1-like protein OS=Oryza sativa subsp. japonica... 0.04 LandPlants
MA_10426631g0010 No alias no hits & (original description: none) 0.04 LandPlants
Mp3g13110.1 No alias CDK5RAP1-like protein OS=Oryza sativa subsp. japonica... 0.09 LandPlants
Pp3c3_14130V3.1 No alias Methylthiotransferase 0.07 LandPlants
Solyc02g084750.4.1 No alias CDK5RAP1-like protein OS=Arabidopsis thaliana... 0.05 LandPlants
AT4G36390 No alias Methylthiotransferase 0.03 SeedPlants
GSVIVT01018858001 No alias CDK5RAP1-like protein OS=Arabidopsis thaliana 0.06 SeedPlants
Gb_31461 No alias CDK5RAP1-like protein OS=Oryza sativa subsp. japonica... 0.03 SeedPlants
LOC_Os11g38030.1 No alias CDK5RAP1-like protein OS=Oryza sativa subsp. japonica... 0.04 SeedPlants
MA_10426631g0010 No alias no hits & (original description: none) 0.03 SeedPlants
Solyc02g084750.4.1 No alias CDK5RAP1-like protein OS=Arabidopsis thaliana... 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
MF GO:0051539 4 iron, 4 sulfur cluster binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002792 TRAM_dom 499 575
IPR007197 rSAM 247 444
IPR013848 Methylthiotransferase_N 87 199
No external refs found!