- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : RPL16A
Description : component *(uL5) of large ribosomal-subunit (LSU) proteome & original description: none
Gene families : OG0001936 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001936_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G18730 | RPL16B | ribosomal protein L16B | 0.03 | OrthoFinder output from all 47 species | |
| AT5G45775 | No alias | Ribosomal L5P family protein | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g17681 | No alias | component *(uL5) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g70327 | RPL16A | component *(uL5) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.02G112300.1 | RPL16A, Ceric.02G112300 | component *(uL5) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00020610.38 | RPL16A | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Cre01.g027000 | RPL16A | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g00272 | RPL16A | component *(uL5) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g38919 | RPL16A | component *(uL5) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01020743001 | RPL16A | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_08546 | RPL16A | component RPL11 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g10820.1 | RPL16A, LOC_Os01g10820 | component RPL11 of LSU proteome component | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os05g11710.1 | RPL16A, LOC_Os05g11710 | component RPL11 of LSU proteome component | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os06g35730.1 | RPL16A, LOC_Os06g35730 | component RPL11 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
| Mp2g24740.1 | RPL16A | component RPL11 of LSU proteome component | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g09123 | No alias | component *(uL5) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c5_3870V3.1 | RPL16A, Pp3c5_3870 | Ribosomal L5P family protein | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c7_20160V3.1 | RPL16A, Pp3c7_20160 | ribosomal protein large subunit 16A | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g17383 | No alias | component *(uL5) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Smo444767 | RPL16A | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g086240.3.1 | RPL16A, Solyc02g086240 | component RPL11 of LSU proteome component | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g07232 | RPL16A | component *(uL5) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g02344 | RPL16A | component *(uL5) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e026886_P003 | RPL16A, Zm00001e026886 | component RPL11 of LSU proteome component | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e037255_P001 | RPL16A, Zm00001e037255 | component RPL11 of LSU proteome component | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000814 | ESCRT II complex | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004807 | triose-phosphate isomerase activity | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | HCCA |
| MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| CC | GO:0030684 | preribosome | IEP | HCCA |
| CC | GO:0032040 | small-subunit processome | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| CC | GO:0036452 | ESCRT complex | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0071985 | multivesicular body sorting pathway | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| No external refs found! |