1. Home
  2. Species
  3. Abrodictyum obscurum
  4. Sequence
  5. Aob_g17774

Aob_g17774 (MED34, ATRECQ2, RECQL2)


Aliases : MED34, ATRECQ2, RECQL2

Description : component *(MED34) of MEDIATOR transcription co-activator complex & original description: none


Gene families : OG0000844 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g17774
Cluster HCCA: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
AT1G31360 MED34, ATRECQ2, RECQL2 RECQ helicase L2 0.03 OrthoFinder output from all 47 species
Adi_g020335 RECQI1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G073400.1 MED34, ATRECQ2,... component *(MED34) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Ceric.30G003800.1 RecQl3, ATRECQ3,... not classified & original description: pacid=50608389... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.26 RecQl3, ATRECQ3 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043484 regulation of RNA splicing IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0050684 regulation of mRNA processing IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0080009 mRNA methylation IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1903311 regulation of mRNA metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR032284 RecQ_Zn-bd 427 482
IPR018982 RQC_domain 489 600
IPR002121 HRDC_dom 621 683
IPR011545 DEAD/DEAH_box_helicase_dom 99 266
IPR001650 Helicase_C 312 413
No external refs found!