1. Home
  2. Species
  3. Lygodium flexuosum
  4. Sequence
  5. Lfl_g22787

Lfl_g22787 (ATRAB1A, ATRABD2B, RAB1A)


Aliases : ATRAB1A, ATRABD2B, RAB1A

Description : D-class RAB GTPase & original description: none


Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g22787
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AT4G17530 RAB1C, ATRAB1C, ATRABD2C RAB GTPase homolog 1C 0.03 OrthoFinder output from all 47 species
Aop_g13747 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G089700.1 RAB1C, ATRAB1C,... D-class RAB GTPase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.39G002700.1 RAB1C, ATRAB1C,... D-class RAB GTPase & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000455.18 RAB1C, ATRAB1C, ATRABD2C Ras-related protein RABD2c OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Ehy_g11117 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01023224001 ATFP8, RABD1, ATRABD1 Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
Lfl_g29131 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g46440 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g07908 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0127.g021845 ATRAB1A, ATRABD2B, RAB1A not classified & original description: CDS=550-1089 0.03 OrthoFinder output from all 47 species
Smo228158 RAB1C, ATRAB1C, ATRABD2C Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005615 extracellular space IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 1 161
No external refs found!