Aob_g17547 (PUB13, ATPUB13)

Aliases : PUB13, ATPUB13

Description : E3 ubiquitin ligase & original description: none

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aob_g17547

Target	Alias	Description	ECC score	Gene Family Method
AT2G28830	PUB12, AtPUB12	PLANT U-BOX 12	0.05	OrthoFinder output from all 47 species
Adi_g009234	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g05257	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene28347.t1	PUB14, ATPUB14,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene72934.t1	PUB13, ATPUB13,...	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g26575	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01024985001	PUB13, ATPUB13	U-box domain-containing protein 13 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01032778001	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula	0.04	OrthoFinder output from all 47 species
Gb_08792	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.03	OrthoFinder output from all 47 species
Gb_29129	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.04	OrthoFinder output from all 47 species
LOC_Os02g13960.1	ATPUB17, PUB17,...	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
LOC_Os02g28720.1	PUB9, ATPUB9,...	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
LOC_Os08g04470.1	PUB8, B80, LOC_Os08g04470	U-box domain-containing protein 8 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os08g32060.1	LOC_Os08g32060	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
MA_10426688g0010	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.03	OrthoFinder output from all 47 species
Ore_g05165	ATPUB17, PUB17	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g17953	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0104.g020085	PUB13, ATPUB13	not classified & original description: CDS=359-691	0.02	OrthoFinder output from all 47 species
Sam_g27911	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo113592	No alias	U-box domain-containing protein 2 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Smo420513	No alias	U-box domain-containing protein 4 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Solyc03g114160.1.1	Solyc03g114160	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
Solyc09g018230.1.1	Solyc09g018230	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Spa_g11886	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g54242	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e014566_P002	PUB9, ATPUB9,...	E3 ubiquitin ligase (PUB)	0.06	OrthoFinder output from all 47 species
Zm00001e028839_P001	Zm00001e028839	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e035415_P001	Zm00001e035415	U-box domain-containing protein 4 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e036734_P001	PUB14, ATPUB14,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	567	602
IPR000225	Armadillo	445	483
IPR000225	Armadillo	487	524
IPR000225	Armadillo	404	442
IPR003613	Ubox_domain	288	358

External Links

No external refs found!

Aob_g17547 (PUB13, ATPUB13)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation