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  5. Aob_g17232

Aob_g17232


Description : STAR-type post-transcriptionally regulatory factor & original description: none


Gene families : OG0001245 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001245_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g17232

Target Alias Description ECC score Gene Family Method Actions
Adi_g083485 No alias STAR-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species
Adi_g113206 No alias STAR-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species
Dac_g02693 No alias STAR-type post-transcriptionally regulatory factor &... 0.03 OrthoFinder output from all 47 species
GSVIVT01029865001 No alias KH domain-containing protein At3g08620 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os02g49080.1 LOC_Os02g49080 KH domain-containing protein At5g56140 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp4g06200.1 No alias KH domain-containing protein At5g56140 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Nbi_g01954 No alias STAR-type post-transcriptionally regulatory factor &... 0.04 OrthoFinder output from all 47 species
Pnu_g17075 No alias STAR-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species
Sam_g06261 No alias STAR-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species
Solyc07g066070.3.1 Solyc07g066070 KH domain-containing protein At5g56140 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc09g031930.3.1 Solyc09g031930 KH domain-containing protein At2g38610 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Tin_g10370 No alias STAR-type post-transcriptionally regulatory factor &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR032377 STAR_dimer 46 80
IPR004088 KH_dom_type_1 170 202
No external refs found!